View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_27 (Length: 233)
Name: NF14878_low_27
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 36149722 - 36149933
Alignment:
| Q |
15 |
atcactttccttcatttgcacttctttttctagcttgggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttct |
114 |
Q |
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| T |
36149722 |
atcactttccttcatttgcacttctttttctagcttgggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttct |
36149821 |
T |
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| Q |
115 |
tcgtctttgcgtgcttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttcttgctcttttttgtgaacttgagcttcaaggg |
214 |
Q |
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| T |
36149822 |
tcgtctttgcgtgcttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttcttgctctttgttgtgaacttcagcttcaaggg |
36149921 |
T |
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| Q |
215 |
tatgattctgtg |
226 |
Q |
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||||||| |||| |
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| T |
36149922 |
tatgattttgtg |
36149933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 211
Target Start/End: Original strand, 36083499 - 36083652
Alignment:
| Q |
58 |
tcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttcgtctttgcgtgcttgaacttcaatggtgtgcggatgtggta |
157 |
Q |
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| T |
36083499 |
tcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttcttcctctttgtgtgcttgaacttccatggtgtccggttgtggtg |
36083598 |
T |
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| Q |
158 |
tagttaaaagtagaggtgctttttcttgctcttttttgtgaacttgagcttcaa |
211 |
Q |
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| T |
36083599 |
tgattaagaggagaagttcttcttcttggtctttgttgtgaacttcaacttcaa |
36083652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 36083606 - 36083739
Alignment:
| Q |
96 |
gaggagaagtgcttcttcttcgtctttgc-gtg--cttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttcttgctctttt |
192 |
Q |
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| T |
36083606 |
gaggagaagttcttcttcttggtctttgttgtgaacttcaacttcaatggtgtgcggtcgtggtttagttaaaaggagaggtgcttcttcttgctctttg |
36083705 |
T |
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| Q |
193 |
ttgtgaacttgagcttcaagggtatgattctgtg |
226 |
Q |
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| T |
36083706 |
ttgtgaacttgattttcgatggtatgattttgtg |
36083739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 36149390 - 36149453
Alignment:
| Q |
52 |
ggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttctt |
115 |
Q |
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| T |
36149390 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
36149453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 36160590 - 36160672
Alignment:
| Q |
60 |
ttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttcgtctttgcgtgcttgaacttcaatgg |
142 |
Q |
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| T |
36160590 |
ttcttctttgttgtctatttgaagtgcaagtgtttggatgagaagtgcttcttcttgctctttgtatgcttgagcttccatgg |
36160672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 36149576 - 36149641
Alignment:
| Q |
58 |
tcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttcttcgtctttg |
123 |
Q |
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| T |
36149576 |
tcttcttctttgtcatctattttgagtgcacatgtgtaattgacaagtgcttcttcttggtctttg |
36149641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 26527458 - 26527357
Alignment:
| Q |
15 |
atcactttccttcatttgcacttctttttctagcttgggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttct |
114 |
Q |
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| T |
26527458 |
atcactttcattcatgtgcacttctttttctagcttgggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttct |
26527359 |
T |
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| Q |
115 |
tc |
116 |
Q |
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|| |
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| T |
26527358 |
tc |
26527357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 26527609 - 26527541
Alignment:
| Q |
47 |
gcttgggagagtcttcttctttctcatctattttaagtgcacatgtttggaggagaagtgcttcttctt |
115 |
Q |
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| T |
26527609 |
gcttaggagactgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
26527541 |
T |
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