View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_30 (Length: 211)
Name: NF14878_low_30
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 20078399 - 20078579
Alignment:
| Q |
18 |
tccacttgatttaattttcaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacat |
117 |
Q |
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| T |
20078399 |
tccacttgatttaatttccaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacat |
20078498 |
T |
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| Q |
118 |
ggcctctacatactcaatagtattacttctacttggaatgctgatggttaccactttcgtgggtgctggaagatctaatat |
198 |
Q |
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| T |
20078499 |
ggcctctacatactcaatagtattacttctacttggaatgatgatggttaccactttcgtgggtgctggaaggtttaatat |
20078579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 20071380 - 20071560
Alignment:
| Q |
18 |
tccacttgatttaattttcaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacat |
117 |
Q |
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|||| ||||||| |||| |||||||||| |||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20071380 |
tccatttgatttcatttccaacacaataatctcatgtgttttcttataaatagctgtctcgctcattccatttgtgtaaattaaaattcgatccaaacat |
20071479 |
T |
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| Q |
118 |
ggcctctacatactcaatagtattacttctacttggaatgctgatggttaccactttcgtgggtgctggaagatctaatat |
198 |
Q |
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| T |
20071480 |
ggcctctacatactcattagtattacttctacttggaacgatggtggttaccactgtcgtgggtgctcgaagatctaatat |
20071560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 20084693 - 20084873
Alignment:
| Q |
18 |
tccacttgatttaattttcaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacat |
117 |
Q |
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| T |
20084693 |
tccacttgatttaatttccaacataatagtctcatgtgttttcctataaatagctttctcgctcattctatttatttaaattaaaattcgatccaaacat |
20084792 |
T |
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| Q |
118 |
ggcctctacatactcaatagtattacttctacttggaatgctgatggttaccactttcgtgggtgctggaagatctaatat |
198 |
Q |
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|||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
20084793 |
ggcctctacatattcaatagtattacttctacttgaaatgatgatggttaccactttcgtgggtgctggaaagtctaatat |
20084873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 20097393 - 20097566
Alignment:
| Q |
34 |
ttcaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattc-aatccaaacatggcctctacatactc |
132 |
Q |
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| T |
20097393 |
ttcaacacaatagtctcatgtgttttcctataaatagctgtctcgctcattccatttgtgtaaat--aaattcgattaaaaacatggcctctacatactc |
20097490 |
T |
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| Q |
133 |
aatagtattacttctacttggaatgctgatggttaccactttcgtgggtgctggaagatctaatattcttggacat |
208 |
Q |
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| T |
20097491 |
aatagtattacttctatttggaatgatgatggttaccactgtcgtgggtgcgggaagatctaatatgattggacat |
20097566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 20067306 - 20067446
Alignment:
| Q |
20 |
cacttgatttaattttcaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacatgg |
119 |
Q |
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| T |
20067306 |
cacttgatttaatttccaacacaatagtctcgtgtgttttcctataaatagctgtctcacttattccatttatgtaaattaaaattcgatccaaacatgg |
20067405 |
T |
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| Q |
120 |
cctctacatactcaatagtattacttctacttggaatgctg |
160 |
Q |
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|||||| ||| ||| ||||||||||| |||||||||||||| |
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| T |
20067406 |
cctctaaatattcactagtattacttatacttggaatgctg |
20067446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 20116033 - 20116162
Alignment:
| Q |
58 |
ttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacatggcctctacatactcaatagtattacttctacttggaatg |
157 |
Q |
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|||| |||||||| ||||| ||| ||||||| ||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20116033 |
ttcctataaatagttgtcttgcttgttccattaatgtgaatcaaaattcgataaaaacatggcctctacatactcaatagtattacttctacttggaatg |
20116132 |
T |
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| Q |
158 |
ctgatggttaccactttcgtgggtgctgga |
187 |
Q |
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| T |
20116133 |
atgatggttaccactgtcgtgggtgctgga |
20116162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 20054258 - 20054351
Alignment:
| Q |
63 |
ataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacatggcctctacatactcaatagtattacttctacttggaatg |
157 |
Q |
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||||||||||||||| ||| |||||||||||| ||| ||| ||| || ||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
20054258 |
ataaatagatgtctcactctttccatttgtgtgaatcaaa-ttccataataacatggcctctaaatactcactagtattacttctacttggaatg |
20054351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 20048687 - 20048780
Alignment:
| Q |
63 |
ataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacatggcctctacatactcaatagtattacttctacttggaatg |
157 |
Q |
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|||||||| |||||| | | |||||||||||| ||||||||| | || |||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
20048687 |
ataaatagttgtctcaccctttccatttgtgtgaattaaaat-ctataaaaacatggcctctaaatactcacaagtattacttctacttggaatg |
20048780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 20038519 - 20038615
Alignment:
| Q |
63 |
ataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaacatggcctctacatactc---aatagtattacttctacttggaatg |
157 |
Q |
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| T |
20038519 |
ataaatagttgtctcaccctttccatttgtgtgaattaaaa-tctataaaaacatggcctctaaatactcacaagtattattacttctacttggaatg |
20038615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 20022528 - 20022610
Alignment:
| Q |
89 |
ttgtgtaaattaaaattcaatccaaacatggcctctacatactcaatagtattacttctacttggaatgctgatggttaccac |
171 |
Q |
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| T |
20022528 |
ttgtgttaatcaaaattcgatcaaaatatgggctctaaatattcattagtattacttttacttggaatgataatgcttaccac |
20022610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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