View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_7 (Length: 376)
Name: NF14878_low_7
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 17127749 - 17128078
Alignment:
| Q |
17 |
agtcagattatttgtggtacatgacagagtaagaatctgtcaacttcttaaacgcaacgagtaattggaatgctaatctattgagtatttattgata--- |
113 |
Q |
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| T |
17127749 |
agtcagattatttgtggtacatgacagagtaagaatctgtcaacttcttaaatgcaacgagtaattggaatgctaatctattgagtatttattgatactt |
17127848 |
T |
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| Q |
114 |
----tcgttatccttcttcagtgtcaacatcagtcctaatgaaggttttataaagaatggccaaaatcccgttcttaccgccatgtcagctggccatgtt |
209 |
Q |
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| T |
17127849 |
aaaattgttatccttcttcagtgtcaacatcagtcctaatgaaggttttataaagaatggccaaaatcccgttcttaccgccatgtcagctggccatgtt |
17127948 |
T |
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| Q |
210 |
ctgcatgtttttattaacggtcaattttggggtaagcatgcctatttttctaagcatttttctattaggaaaattccaattttacataccagaaatactt |
309 |
Q |
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| T |
17127949 |
ctgcatgtttttattaacggtcaattttggggtaagcatgcctattttgctaagcatttttctattaggaaaattccaattttacataccagaaatactt |
17128048 |
T |
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| Q |
310 |
attagtatgaaatccagagataacatattt |
339 |
Q |
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| T |
17128049 |
attagcacgaaatccagagataacatattt |
17128078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 5231982 - 5232034
Alignment:
| Q |
117 |
ttatccttcttcagtgtcaacatcagtcctaatgaaggttttataaagaatgg |
169 |
Q |
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| T |
5231982 |
ttatccattttcagtgtcaacattagtcctagtgaaagttttattaagaatgg |
5232034 |
T |
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