View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14878_low_8 (Length: 360)
Name: NF14878_low_8
Description: NF14878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14878_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 350
Target Start/End: Original strand, 832311 - 832604
Alignment:
| Q |
61 |
acaggcgatagagtagtgagaattggaggaattaagtaagggtatgatgtggtatgaggcccagtattacgttgaaagtttggtgcagccttattaaaag |
160 |
Q |
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| T |
832311 |
acaggcgatagagtagtgagaattggaggaa----gtaagggtatgatgtggtccgaggcccagtattacgttgaaagtttggtgcagctttattaaaag |
832406 |
T |
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| Q |
161 |
tgagtgagtttctcttccacattttacttgtttgaatctatgt--------tacttcgtttatgttgttataataatagattgtgtgattgctttgctgc |
252 |
Q |
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| T |
832407 |
tgagtgagtttctcttccacatttttcttgtttgaatctatgtatgttaattacttcgtttttgttgttataataatagattgtgtgattgctttgctgc |
832506 |
T |
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| Q |
253 |
ttaattagcttctcggtattaattgttgagtaattatttattgaccattgtcttgttatttatgcttattgtaacttagataatgatattttctatat |
350 |
Q |
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| T |
832507 |
ttaattagcttgtcggtattaattgttgagttattatttattgaccattttcttgttatttatgcttattgtaacttagatgatgatattttctatat |
832604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 10464584 - 10464640
Alignment:
| Q |
163 |
agtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg |
219 |
Q |
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| T |
10464584 |
agtgagtttctcttccacatattacttgttagaatttatattacttcatttatgttg |
10464640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 10482487 - 10482528
Alignment:
| Q |
163 |
agtgagtttctcttccacattttacttgtttgaatctatgtt |
204 |
Q |
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| T |
10482487 |
agtgagtttctcttccacatattacttgtttgaatttatgtt |
10482528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 10475519 - 10475575
Alignment:
| Q |
163 |
agtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg |
219 |
Q |
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| T |
10475519 |
agtgagtttctcttccacatattacttgtttgaatttatattatttcatgtatgttg |
10475575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 8443223 - 8443169
Alignment:
| Q |
164 |
gtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg |
219 |
Q |
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| T |
8443223 |
gtgagtttctattccacattt-acttgtttgaatttttgttacttcgtgtatgttg |
8443169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 10468348 - 10468382
Alignment:
| Q |
163 |
agtgagtttctcttccacattttacttgtttgaat |
197 |
Q |
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| T |
10468348 |
agtgagtttctcttccacatattacttgtttgaat |
10468382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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