View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14879_high_13 (Length: 272)

Name: NF14879_high_13
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14879_high_13
NF14879_high_13
[»] chr4 (14 HSPs)
chr4 (20-259)||(12211225-12211471)
chr4 (90-259)||(31944616-31944792)
chr4 (90-259)||(53693033-53693209)
chr4 (90-259)||(4325412-4325587)
chr4 (89-258)||(55464660-55464836)
chr4 (137-259)||(3074423-3074545)
chr4 (89-213)||(27364882-27365013)
chr4 (169-259)||(1147585-1147675)
chr4 (191-259)||(25182878-25182946)
chr4 (147-259)||(8897925-8898037)
chr4 (85-183)||(42843702-42843807)
chr4 (147-259)||(10632643-10632757)
chr4 (207-247)||(48130099-48130139)
chr4 (207-247)||(30110096-30110136)
[»] chr7 (20 HSPs)
chr7 (89-258)||(27387306-27387482)
chr7 (98-259)||(9230409-9230577)
chr7 (89-259)||(26493713-26493890)
chr7 (89-258)||(19399977-19400153)
chr7 (89-258)||(38575289-38575465)
chr7 (89-259)||(45197643-45197819)
chr7 (90-259)||(23179885-23180060)
chr7 (90-238)||(8638614-8638770)
chr7 (154-256)||(14088819-14088921)
chr7 (154-256)||(14398837-14398939)
chr7 (154-256)||(25491636-25491738)
chr7 (90-184)||(43727996-43728097)
chr7 (100-236)||(18375416-18375557)
chr7 (201-259)||(10224009-10224067)
chr7 (207-255)||(26782317-26782365)
chr7 (90-136)||(23804627-23804673)
chr7 (51-89)||(34224482-34224520)
chr7 (191-259)||(25024631-25024699)
chr7 (191-239)||(9557796-9557844)
chr7 (207-247)||(10868462-10868502)
[»] chr8 (22 HSPs)
chr8 (90-259)||(13152393-13152569)
chr8 (89-259)||(30791457-30791634)
chr8 (96-259)||(9256395-9256565)
chr8 (92-259)||(14446834-14447008)
chr8 (90-259)||(16532631-16532806)
chr8 (89-258)||(21958511-21958687)
chr8 (91-259)||(27190772-27190947)
chr8 (90-259)||(24333714-24333893)
chr8 (147-259)||(32359486-32359598)
chr8 (147-254)||(32372022-32372129)
chr8 (147-259)||(32342880-32342992)
chr8 (147-259)||(32355367-32355479)
chr8 (154-259)||(40146009-40146114)
chr8 (139-259)||(10014434-10014554)
chr8 (90-259)||(28846621-28846781)
chr8 (149-255)||(34228232-34228338)
chr8 (192-259)||(42447034-42447101)
chr8 (112-180)||(10467786-10467861)
chr8 (208-259)||(24592336-24592387)
chr8 (208-259)||(10467876-10467927)
chr8 (207-248)||(3435409-3435450)
chr8 (198-247)||(40470481-40470529)
[»] scaffold0019 (1 HSPs)
scaffold0019 (85-259)||(134853-135034)
[»] chr1 (20 HSPs)
chr1 (90-259)||(52753819-52753992)
chr1 (90-259)||(9637121-9637297)
chr1 (90-251)||(25017386-25017554)
chr1 (89-256)||(26272931-26273105)
chr1 (90-259)||(14498898-14499073)
chr1 (90-259)||(40864718-40864894)
chr1 (90-259)||(48606611-48606787)
chr1 (156-259)||(17874851-17874954)
chr1 (90-249)||(32379865-32380027)
chr1 (115-259)||(35948977-35949128)
chr1 (90-259)||(30559004-30559180)
chr1 (89-183)||(17127438-17127539)
chr1 (85-226)||(21973820-21973968)
chr1 (207-258)||(11843899-11843950)
chr1 (137-259)||(30054875-30054997)
chr1 (208-262)||(170445-170500)
chr1 (207-247)||(33489827-33489867)
chr1 (207-247)||(41972262-41972302)
chr1 (191-240)||(28463203-28463252)
chr1 (215-259)||(51053101-51053145)
[»] chr5 (14 HSPs)
chr5 (90-256)||(3055482-3055655)
chr5 (85-259)||(203846-204026)
chr5 (90-259)||(23244569-23244745)
chr5 (90-259)||(8785782-8785958)
chr5 (89-227)||(1280377-1280522)
chr5 (90-259)||(11852715-11852891)
chr5 (111-259)||(22712898-22713045)
chr5 (137-259)||(27168802-27168924)
chr5 (139-259)||(2228971-2229091)
chr5 (115-259)||(22541911-22542062)
chr5 (89-239)||(26540674-26540831)
chr5 (147-229)||(19518971-19519053)
chr5 (207-247)||(28801427-28801467)
chr5 (207-247)||(38269402-38269442)
[»] chr3 (14 HSPs)
chr3 (89-258)||(31989028-31989204)
chr3 (90-249)||(51261979-51262145)
chr3 (89-258)||(24908393-24908569)
chr3 (89-258)||(53710397-53710573)
chr3 (89-256)||(43137126-43137299)
chr3 (89-256)||(37381871-37382045)
chr3 (93-259)||(3856875-3857048)
chr3 (150-259)||(24988812-24988921)
chr3 (90-221)||(15667973-15668111)
chr3 (147-259)||(22934798-22934910)
chr3 (201-258)||(51408609-51408666)
chr3 (191-239)||(38282515-38282563)
chr3 (194-259)||(9743379-9743444)
chr3 (207-253)||(43585933-43585979)
[»] chr2 (19 HSPs)
chr2 (90-259)||(12539574-12539749)
chr2 (89-256)||(19951833-19952007)
chr2 (94-259)||(35649659-35649831)
chr2 (89-256)||(33453190-33453364)
chr2 (90-249)||(34317482-34317642)
chr2 (89-259)||(22483548-22483725)
chr2 (89-259)||(22464669-22464847)
chr2 (89-259)||(34526351-34526529)
chr2 (169-237)||(31392486-31392554)
chr2 (147-259)||(18425956-18426072)
chr2 (201-259)||(13309707-13309765)
chr2 (138-183)||(13308771-13308816)
chr2 (138-259)||(34907640-34907758)
chr2 (210-255)||(7886661-7886706)
chr2 (214-259)||(31392927-31392972)
chr2 (51-92)||(35651564-35651605)
chr2 (207-259)||(26656340-26656392)
chr2 (205-259)||(1954951-1955005)
chr2 (191-247)||(45121340-45121396)
[»] chr6 (11 HSPs)
chr6 (90-258)||(12180525-12180700)
chr6 (94-259)||(11970964-11971135)
chr6 (137-259)||(3050917-3051041)
chr6 (97-259)||(25599159-25599331)
chr6 (89-259)||(24074411-24074588)
chr6 (90-259)||(25340445-25340620)
chr6 (137-258)||(1296563-1296684)
chr6 (137-235)||(30621227-30621324)
chr6 (154-259)||(32441973-32442078)
chr6 (51-93)||(22257696-22257738)
chr6 (58-93)||(24696100-24696135)
[»] scaffold0007 (1 HSPs)
scaffold0007 (89-259)||(259917-260094)
[»] scaffold0178 (1 HSPs)
scaffold0178 (90-259)||(17740-17916)
[»] scaffold0015 (1 HSPs)
scaffold0015 (89-258)||(214161-214337)
[»] scaffold0198 (1 HSPs)
scaffold0198 (137-259)||(1450-1572)
[»] scaffold0726 (1 HSPs)
scaffold0726 (150-259)||(950-1059)
[»] scaffold0002 (1 HSPs)
scaffold0002 (139-256)||(435350-435469)
[»] scaffold0168 (1 HSPs)
scaffold0168 (89-259)||(15813-15991)
[»] scaffold0012 (1 HSPs)
scaffold0012 (89-259)||(197104-197282)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 12211471 - 12211225
Alignment:
Q  20 ctaaaagcatgatagagcccgatgaacttaattggttgatagaacaagtattgagaatatgaatgttgtgcaacaagatcaacgatgtgtagttcaatga 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12211471 ctaaaagcatgacagagcccgatgaacttaattggttgatagaacaagtattgagaatatgaatgttgtgcaacaagatcaacgatgtgtggttcaatga 12211372  T
Q  120 cttgatgatatgtt-------acaggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcattta 212  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||    
T  12211371 cttgatgatatgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcgaacattcatttcaatgaggtctcgaaaatgacattta 12211272  T
Q  213 cctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  12211271 cctcctaattttatttagcacactattggtaggttatatttcatctc 12211225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 31944616 - 31944792
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||| ||||||||||||||    
T  31944616 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgtgagatattcaagtcacttgatgatgttgatattattcgaacattc 31944715  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| ||||||||| |||| ||||||||||||||||||||||||  |||||||||||| ||||| |||||||||    
T  31944716 accgcaaagaggtctcggaaagggcatttacctcctaattttatttagtacactattgacaagttatgtttcatctc 31944792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 53693209 - 53693033
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||       ||||||| ||||| || |||||||||||||| ||||||||||||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcgaacattc 53693110  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||  ||| ||||||||| |||| ||||| ||||| |||||| ||||| |||||||||| || ||||| |||||||||    
T  53693109 atcgcaaagaggtctcggaaagggcattcacctcttaatttcatttagcacactattggcaagttatgtttcatctc 53693033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 4325412 - 4325587
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||       ||||||| ||||  || |||||||||||||| ||||| ||||||||    
T  4325412 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgggagataatcaacccacttgatgatgttgatattatttgaacattc 4325511  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   | |  | |||||  |||| ||| |||||||||||||||||||| ||||||||||||||||||| || ||||||    
T  4325512 acagc-agaatgtctcagaaagggcaattacctcctaattttatttagcacactattgacaggttatgttgcatctc 4325587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 55464836 - 55464660
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       ||||| | |||||||| |||||||||||||| |||||||||||||    
T  55464836 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagaaaatcaagtcacttgatgatgttgatattattcgaacatt 55464737  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    || |  || ||||   ||||||  |||| ||||||||||||||||||| |||   |||| |||||||||||||||||    
T  55464736 cactcgaaagaggctacgaaaaaggcatctacctcctaattttatttagcacgtaattggcaggttatatttcatct 55464660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 3074423 - 3074545
Alignment:
Q  137 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    ||||||| |||||||| |||||||||||||| ||||| ||||||||||  ||| ||||||||   ||| ||||||| |||||||||||||||| ||||||    
T  3074423 ggagataatcaagtcacttgatgatgttgatattatttgaacattcatcgcaaagaggtctcaggaagggcatttatctcctaattttatttagcacact 3074522  T
Q  237 attgacaggttatatttcatctc 259  Q
    |||| || ||||| |||||||||    
T  3074523 attggcaagttatgtttcatctc 3074545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 27364882 - 27365013
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    ||||||||||||||  ||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  27364882 gcaacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 27364981  T
Q  182 catttcaatgaggtctcgaaaagagcatttac 213  Q
    ||    || |||||||||||||| ||||||||    
T  27364982 caccgaaaagaggtctcgaaaagggcatttac 27365013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 1147585 - 1147675
Alignment:
Q  169 ttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||| ||||  |||||||||||| ||||| |||||||||    
T  1147585 ttattcgaacattcattgcaaagaggtctcggaaagagtatttacctcctaattttctttaaaacactattgacaagttatgtttcatctc 1147675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 25182946 - 25182878
Alignment:
Q  191 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |||||||||||||| | |||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  25182946 gaggtctcgaaaagggtatttaccttctaattttatttagcacactattgataggttatatttcatctc 25182878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 8898037 - 8897925
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 246  Q
    |||||| | |||||||||||| |||||||| ||||||   ||| ||||||||  |||||  |||||||||||||||||||||| || |||||||  || |    
T  8898037 aagtcactggatgatgttgatattattcgagcattcaccgcaaagaggtctcagaaagactatttacctcctaattttatttagcaaactattggtagtt 8897938  T
Q  247 tatatttcatctc 259  Q
    |||||||||||||    
T  8897937 tatatttcatctc 8897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 42843702 - 42843807
Alignment:
Q  85 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 177  Q
    |||||||||||||||||| |||||| ||| ||||| |||||||||||||| |        ||||||||||||||| |||||||||||||| ||| |||||    
T  42843702 ttgtgcaacaagatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgatgttgatattaatcgaa 42843801  T
Q  178 cattca 183  Q
    ||||||    
T  42843802 cattca 42843807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 10632757 - 10632643
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacatt--catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacag 244  Q
    |||||| ||||||||||| || |||||||||||||  ||   ||| || |||||| ||| | ||||||||||||||||||||||  ||||||||||  ||    
T  10632757 aagtcacttgatgatgttaatgttattcgaacattttcaccgcaaagaagtctcggaaatatcatttacctcctaattttattttgcacactattggtag 10632658  T
Q  245 gttatatttcatctc 259  Q
     ||||||||||||||    
T  10632657 cttatatttcatctc 10632643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 48130099 - 48130139
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtt 247  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  48130099 catttacctcctaattttatttagcacactattgacgggtt 48130139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 30110096 - 30110136
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtt 247  Q
    |||||||| |||||||||||||| |||||||||||| ||||    
T  30110096 catttaccacctaattttatttagcacactattgacgggtt 30110136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 27387482 - 27387306
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  27387482 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 27387383  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    || |  || |||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  27387382 cactcgaaagaggtcgcggaaagagcatttacctcctaattttatttagcacgctattgacaggttatatttcatct 27387306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 259
Target Start/End: Original strand, 9230409 - 9230577
Alignment:
Q  98 tcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaat 190  Q
    |||||||||||| ||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||  |||     
T  9230409 tcaacgatgtgtggttcaatgacttgatgatatgttacatagagcgggagatactcaagtcatttgatgatgttgatattattcgaacattcatcgcaaa 9230508  T
Q  191 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||||||| | ||| |||||||||    
T  9230509 gaggtatcgaaaagggcatttacctcctaattttatttagcacactattgacaaggtatgtttcatctc 9230577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 89 - 259
Target Start/End: Complemental strand, 26493890 - 26493713
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| ||| |||||| ||| ||||||||||||||| ||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  26493890 gcaacaagatgaacaatgtgtggttaaatgacttgatgatacgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 26493791  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||    || ||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  26493790 caccgtaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgacaggttatatttcatctc 26493713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 19399977 - 19400153
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||  |||||||||||||| |||||||||||||    
T  19399977 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacatt 19400076  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    || |  || |||||| || |||| | |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  19400077 cactcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattggcaggttatatttcatct 19400153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 38575465 - 38575289
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    ||||||| |||||| ||| || ||| || |||||||||||||||||||       ||||||||| |||||| |||||||||||||| |||||||||||||    
T  38575465 gcaacaatatcaacaatgggtggttgaacgacttgatgatatgttacaccgagcgggagatattaaagtcacttgatgatgttgatattattcgaacatt 38575366  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    || |  || |||||| || ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  38575365 cactcgaaagaggtcgcggaaagaacatttacctcctaattttatttagcacgctattgacaggttatatttcatct 38575289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 45197643 - 45197819
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgtta------caggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||       |||||||||||||||||| |||| ||||||||| || |||||||||||    
T  45197643 gcaacaagatcaacaatgtgtggttcaatgacttgatgatatattcatcgagcaggagatattcaagtcacttgacgatgttgatattgttcgaacattc 45197742  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| |||||||||   || |||||||| ||||||||||||||| ||| ||||||  |||||||||||||||||    
T  45197743 accacaaagaggtctcggggagggcatttacatcctaattttatttagcaccctattggtaggttatatttcatctc 45197819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 23180060 - 23179885
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||        |||||||||||| || ||||| |||||||| ||||||||||||||    
T  23180060 caacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccgagcgagagatattcaaggcacttgataatgttgatattattcgaacattc 23179961  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| ||||||| | |||| ||||||| |||||||||| ||||| ||||||||||||| ||||| |||||||||    
T  23179960 accgcaaagaggtcttggaaagggcattta-ctcctaatttaatttagcacactattgacaagttatgtttcatctc 23179885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 8638614 - 8638770
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtta-------caggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||       || |||||||||||||||||||||||| | ||| ||||||||||||||    
T  8638614 caacaagatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcgatattattcgaacattc 8638713  T
Q  183 atttcaatga-ggtctcgaaaagagcatttacctcctaattttatttaccacactat 238  Q
    |   ||| || ||||||| |||| |||||||||||||||||||||||| ||||||||    
T  8638714 aacgcaaagagggtctcggaaagggcatttacctcctaattttatttagcacactat 8638770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 14088819 - 14088921
Alignment:
Q  154 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 253  Q
    ||||||||| |||| |||||| ||||| |||  ||| ||||||||| |||  |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  14088819 ttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttatattt 14088918  T
Q  254 cat 256  Q
    |||    
T  14088919 cat 14088921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 14398837 - 14398939
Alignment:
Q  154 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 253  Q
    ||||||||| |||| |||||| ||||| |||  ||| ||||||||| |||  |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  14398837 ttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttatattt 14398936  T
Q  254 cat 256  Q
    |||    
T  14398937 cat 14398939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 25491738 - 25491636
Alignment:
Q  154 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 253  Q
    |||||||||||||| ||||||||||||||| |  || |||||||| ||||  |||||||| |||| |||||||||| ||||||||||||| |||||||||    
T  25491738 ttgatgatgttgatattattcgaacattcactgtaaagaggtctcaaaaaaggcatttacttcctgattttatttatcacactattgacatgttatattt 25491639  T
Q  254 cat 256  Q
    |||    
T  25491638 cat 25491636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 43727996 - 43728097
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtt-------acaggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||| |||||||||||||| |||||||||||||||||||||||       || |||||||||||||||| |||||||||||||| |||||| |||||||    
T  43727996 caacatgatcaacgatgtgtggttcaatgacttgatgatatgttatatcgaacgggagatattcaagtcagttgatgatgttgatattattcaaacattc 43728095  T
Q  183 at 184  Q
    ||    
T  43728096 at 43728097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 18375416 - 18375557
Alignment:
Q  100 aacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatga 192  Q
    |||||||||| |||||||||||||||||||| |||||       |||||||||||| ||| | ||| |||||||| ||||||||||||||||   ||  |    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcgaacattcatgcgaa--a 18375513  T
Q  193 ggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    |||||||||||| |||||||| ||||||||  ||||| ||||||    
T  18375514 ggtctcgaaaagggcatttacttcctaattcgatttagcacact 18375557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 10224009 - 10224067
Alignment:
Q  201 aaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  10224009 aaagaccatttacctcctaattttatttaccacactatcggcagattatatttcatctc 10224067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 26782365 - 26782317
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggttatatttca 255  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  26782365 catttacctcctaattttatttagcacactattgacaagttatgtttca 26782317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 23804673 - 23804627
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca 136  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||    
T  23804673 caacaagatcaacgatgtgtggttcaatgacttgttgatatattaca 23804627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 34224520 - 34224482
Alignment:
Q  51 ttggttgatagaacaagtattgagaatatgaatgttgtg 89  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  34224520 ttggttgataaaacaagtattgagaatatgaatgttgtg 34224482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 25024631 - 25024699
Alignment:
Q  191 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||  |||| |||||||||||||||||||||| | ||   |||||||| |||||||||||||||    
T  25024631 gaggtctcagaaagggcatttacctcctaattttattaagcatgttattgacatgttatatttcatctc 25024699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 9557796 - 9557844
Alignment:
Q  191 gaggtctcgaaaagagcatttacctcctaattttatttaccacactatt 239  Q
    ||||||||  |||| | |||||||||||||||||||||| |||||||||    
T  9557796 gaggtctctgaaaggggatttacctcctaattttatttagcacactatt 9557844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 10868502 - 10868462
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtt 247  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  10868502 catttacctcctaattttatttagcacacttttgacgggtt 10868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 13152569 - 13152393
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| | |||||| |||||||    
T  13152569 caacatgatcaacgctgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttggtattattccaacattc 13152470  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||  ||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  13152469 atcgcaaagaggtctcggaaagggcatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 13152393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 89 - 259
Target Start/End: Complemental strand, 30791634 - 30791457
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||  ||| || ||||||||||||||||||||||||||       |||||||||||||||| |||||||  ||||| |||||||||||||    
T  30791634 gcaacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgacattgatattattcgaacatt 30791535  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||   ||| ||||||||| |||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  30791534 caccgcaaagaggtctcggaaagggcatttaccacctaattttatttagcacgctattgacaggttatatttcatctc 30791457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 9256395 - 9256565
Alignment:
Q  96 gatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttca 188  Q
    |||||| ||||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| | ||||||||||||||  ||    
T  9256395 gatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataattcgaacattcatcgca 9256494  T
Q  189 atgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    | ||||||||| |||   ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  9256495 aagaggtctcgcaaatgacatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 9256565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 92 - 259
Target Start/End: Original strand, 14446834 - 14447008
Alignment:
Q  92 acaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattcat 184  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||| |||||| ||||||||     
T  14446834 acaagatcaacgatttgtggttcaatgacttgatgatatgttacaccaagagagagatattcaagtcacttgatgatgttgatattattctaacattcac 14446933  T
Q  185 ttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    | ||| ||||||||| ||||  |||| |||||||||||||||||| |||||||||||  ||||| ||||||||||    
T  14446934 tgcaaagaggtctcggaaaggacattcacctcctaattttatttagcacactattgatcggttacatttcatctc 14447008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 16532806 - 16532631
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |        ||||||||||||||| |||||||||||||| |||||| |||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgagagatattcaagtcacttgatgatgttgatattattcaaacattc 16532707  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| ||| | ||| |||| |||||||||||||||||||||||| ||| |||||| | ||||||||||||||||    
T  16532706 accgcaaagagatatcggaaagggcatttacctcctaattttatttagcacgctattg-ctggttatatttcatctc 16532631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 21958511 - 21958687
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| || ||| ||| ||||||||||||||||||||||       |||||||||| ||||| |||||||||||||| |||||||||||||    
T  21958511 gcaacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatt 21958610  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
     | |  || |||||| || |||| | |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  21958611 aactcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 21958687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 259
Target Start/End: Original strand, 27190772 - 27190947
Alignment:
Q  91 aacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattca 183  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||       |||||||||||||||| |||||||||||||| ||| ||||| |||||    
T  27190772 aacaagatcaacgatgtgtggttcaatgacttgatgatatgttgcacctagcgggagatattcaagtcacttgatgatgttgatattactcgaatattca 27190871  T
Q  184 tttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
       ||| || |||||  ||||  |||||||||||||||||||||||  ||||||||| || ||||| |||||||||    
T  27190872 ccgcaaagatgtctcagaaaggacatttacctcctaattttatttagtacactattggcaagttatgtttcatctc 27190947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 24333714 - 24333893
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt- 181  Q
    |||||||||||||||||| |  ||||||||||| |||||||||||||       |||||||||||||||| ||||||||||| || |||||||||||||     
T  24333714 caacaagatcaacgatgtatgattcaatgactttatgatatgttacactgagcgggagatattcaagtcacttgatgatgttaatattattcgaacatta 24333813  T
Q  182 --catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
      ||   ||| ||||||||| |||||| ||||||||| | |||||||||| |||||||||||| |||||| |||||||||    
T  24333814 ttcaccacaaagaggtctcggaaagagaatttacctcatgattttatttagcacactattgaccggttatgtttcatctc 24333893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 32359486 - 32359598
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 246  Q
    |||||| |||||||||||||| ||||||||||||||| | ||| |||||||| ||||   ||||||||||||||||||||||| ||||||||||  || |    
T  32359486 aagtcacttgatgatgttgatattattcgaacattcactgcaaagaggtctcaaaaatgtcatttacctcctaattttatttagcacactattggtagat 32359585  T
Q  247 tatatttcatctc 259  Q
    |||||||||||||    
T  32359586 tatatttcatctc 32359598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 254
Target Start/End: Original strand, 32372022 - 32372129
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 246  Q
    |||||| |||||||||||||| |||||||||||||||   ||| |||||||| |||||  ||||||||||||||||||||||| ||||||||||  ||||    
T  32372022 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcaaaaaggtcatttacctcctaattttatttagcacactattggtaggt 32372121  T
Q  247 tatatttc 254  Q
    ||||||||    
T  32372122 tatatttc 32372129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 32342880 - 32342992
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 246  Q
    |||||| |||||||||||||| ||||||||||||||| | |||  ||||||| |||||  ||||||||||||||||||||||| ||||| ||||  | ||    
T  32342880 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32342979  T
Q  247 tatatttcatctc 259  Q
    |||||||||||||    
T  32342980 tatatttcatctc 32342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 32355367 - 32355479
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 246  Q
    |||||| |||||||||||||| ||||||||||||||| | |||  ||||||| |||||  ||||||||||||||||||||||| ||||| ||||  | ||    
T  32355367 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32355466  T
Q  247 tatatttcatctc 259  Q
    |||||||||||||    
T  32355467 tatatttcatctc 32355479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 40146114 - 40146009
Alignment:
Q  154 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 253  Q
    |||||||||||||| |||||||||||||||   ||| ||||||||| |||  |||| ||||||||||||||||||| |||||||||| ||| |||| |||    
T  40146114 ttgatgatgttgatattattcgaacattcacaacaaagaggtctcggaaatggcatctacctcctaattttatttagcacactattggcagattatgttt 40146015  T
Q  254 catctc 259  Q
    ||||||    
T  40146014 catctc 40146009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 10014554 - 10014434
Alignment:
Q  139 agatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactat 238  Q
    ||||||||| |||| |||||||||||||| |||||| ||||||||    || ||| | | | |||| |||||||||||||||||||||||| |||| |||    
T  10014554 agatattcatgtcacttgatgatgttgatattattcaaacattcaccggaaagagattttggaaagggcatttacctcctaattttatttagcacattat 10014455  T
Q  239 tgacaggttatatttcatctc 259  Q
    |||||  ||||||||||||||    
T  10014454 tgacatattatatttcatctc 10014434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 28846621 - 28846781
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgat----atgttacaggagatattcaagtcatttgatgatgttgattttattcgaacattcatt 185  Q
    |||||||||||||||||||| ||||||||||||||||||    ||    | |||||||||||||||| |||||||||||||| |||||||||||||||      
T  28846621 caacaagatcaacgatgtgtggttcaatgacttgatgatgtacatcgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcac- 28846719  T
Q  186 tcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
                || |||| ||||||||||| |||||||||||| |||||| ||||||| |||| |||||||||    
T  28846720 ------------cgcaaagggcatttacctcataattttatttagcacacttttgacagattatgtttcatctc 28846781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 34228338 - 34228232
Alignment:
Q  149 gtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggtta 248  Q
    |||| |||||||||||||| ||||||||||||| |   ||| ||||||| | |||  ||||||||||||| |||||||||| |||| |||||||| ||||    
T  34228338 gtcacttgatgatgttgatattattcgaacatttaccacaaagaggtcttggaaattgcatttacctcctcattttatttatcacattattgacatgtta 34228239  T
Q  249 tatttca 255  Q
    |||||||    
T  34228238 tatttca 34228232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 42447034 - 42447101
Alignment:
Q  192 aggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |||| |||||||  |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  42447034 aggtatcgaaaaatgcatttacctcctaattttatttagcacactaatgacaagttatatttcatctc 42447101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 10467786 - 10467861
Alignment:
Q  112 ttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacat 180  Q
    |||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcgaacat 10467861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 24592387 - 24592336
Alignment:
Q  208 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  24592387 atttacctcctaattttatttagcacactattggcaggttatgtttcatctc 24592336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 10467876 - 10467927
Alignment:
Q  208 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||| |||||||||||| |||| |||||||| ||||| |||||||||    
T  10467876 atttacctcataattttatttagcacaatattgacaagttatgtttcatctc 10467927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 3435409 - 3435450
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtta 248  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  3435409 catttacctcctaactttatttagcacactattgacgggtta 3435450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 40470529 - 40470481
Alignment:
Q  198 cgaaaagagcatttacctcctaattttatttaccacactattgacaggtt 247  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| ||||    
T  40470529 cgaaaaga-catttaccttctaattttatttagcacactattgacgggtt 40470481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 135034 - 134853
Alignment:
Q  85 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 177  Q
    |||||||||||||| ||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||    
T  135034 ttgtgcaacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaa 134935  T
Q  178 cattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||    || ||||||||| |||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  134934 cattcaccggaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgataggttatatttcatctc 134853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 52753992 - 52753819
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||    
T  52753992 caacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagatattcaagtcatttgatgatgttgatattattcgaacattc 52753893  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
        ||| ||||||||| |||| | ||||||||||||||||||| || ||||||||||||| ||||| |||||||||    
T  52753892 ---gcaaagaggtctcggaaagggtatttacctcctaattttatctagcacactattgacaagttatgtttcatctc 52753819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 9637121 - 9637297
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||       || ||||||||||||| |||||||||||||| ||||| ||||||||    
T  9637121 caacaagatcaatgatgcgtggttcaatgacttgatgatatgttacaccgagcgggtgatattcaagtcacttgatgatgttgatattatttgaacattc 9637220  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| ||||||||| |||| |||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||    
T  9637221 accgcaaagaggtctcggaaagggcatttacatcctaattttatttagcacactattgataggttatgtttcatctc 9637297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 25017386 - 25017554
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||        ||||||||||| ||| |||||||||||||| |||||||||| |||    
T  25017386 caacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcgagagatattcaaatcacttgatgatgttgatattattcgaacgttc 25017485  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatat 251  Q
    |   ||| ||||||||  |||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  25017486 accgcaaagaggtctcagaaagggcatatacctcctaattttatttagcacactattgacaggttatat 25017554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 26273105 - 26272931
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||||       ||||||||||||||||  |||||||||| || |||||||||||||    
T  26273105 gcaacaaaatcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattattcgaacatt 26273006  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 256  Q
    |||  |||  |||||||| |||| ||| |||||| ||||||||||||| |||||||||| || ||||||||||||    
T  26273005 catcgcaaacaggtctcggaaagggcaattacctactaattttatttagcacactattggcatgttatatttcat 26272931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 14498898 - 14499073
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||| |||||||||| ||| || ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14498898 caacatgatcaacgatttgtggt-caatgacttgatgatatcttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattc 14498996  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||  ||| ||||||||  ||||  |||||||||||||||| ||||||  |||||||||||| ||||| |||||||||    
T  14498997 atcgcaaagaggtctcagaaaggacatttacctcctaattatatttaaaacactattgacaagttatgtttcatctc 14499073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 40864894 - 40864718
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||        | ||||||||||||| ||||| |||||||| ||||||||||||||    
T  40864894 caacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgaacgagggatattcaagtcacttgataatgttgatattattcgaacattc 40864795  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| ||||| |   |||| |||||||||||||||||||||||| ||||||||| ||||||||| || ||||||    
T  40864794 accgcaaagaggttttagaaagggcatttacctcctaattttatttagcacactattaacaggttatgttacatctc 40864718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 48606787 - 48606611
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||| | ||||| |||||||| |||||| |||| ||    
T  48606787 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtaacttgataatgttgatattattcaaacactc 48606688  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| |||||||   |||| ||||||||||| |||||||||||| |||||||||| ||| |||| |||||||||    
T  48606687 accgcaaagaggtcttcgaaagggcatttacctcataattttatttagcacactattggcagattatgtttcatctc 48606611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 17874851 - 17874954
Alignment:
Q  156 gatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttca 255  Q
    |||||||||||| |||||| ||||||||   ||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  17874851 gatgatgttgatattattcaaacattcaccgcaaagaggtctcgaaaagatcatttaccttctaattttatttaccacactattgacagattatatttca 17874950  T
Q  256 tctc 259  Q
    ||||    
T  17874951 tctc 17874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 32380027 - 32379865
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| |||||||||||||||   ||||||||       |||||||||||| ||| |||||||||||||| |||||||||||||     
T  32380027 caacaagatcaacgatgtgtggttcaatgacttgat---atgttacaccaaacgggagatattcaattcacttgatgatgttgatattattcgaacattt 32379931  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 249  Q
    |   ||| ||||| |||||||   ||||||||||||||||||||||| |||||||||||||||||||    
T  32379930 acg-caaagaggtatcgaaaatgacatttacctcctaattttatttagcacactattgacaggttat 32379865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 35949128 - 35948977
Alignment:
Q  115 aatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagc 207  Q
    ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||||    || ||||||||| ||||  |    
T  35949128 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcgaacattcaccgaaaagaggtctcggaaaggac 35949029  T
Q  208 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |||||||||||||||||||||  ||| |||| || || ||||||||||||||    
T  35949028 atttacctcctaattttattttgcacgctatagatagattatatttcatctc 35948977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 30559180 - 30559004
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||        ||||||||||||||| ||||||||| |||| ||||||||||||||    
T  30559180 caacaagatcaacgatgtgtggttctatgacttgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgctgatattattcgaacattc 30559081  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |    ||  || ||||  |||    |||||||||||||||||||||| ||||||||||  || |||| |||||||||    
T  30559080 accgtaaatagatctcataaatgatatttacctcctaattttatttagcacactattggtagattatgtttcatctc 30559004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 17127438 - 17127539
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||  |||||||||||||| |||||||||||||    
T  17127438 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacatt 17127537  T
Q  182 ca 183  Q
    ||    
T  17127538 ca 17127539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 21973968 - 21973820
Alignment:
Q  85 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 177  Q
    |||||||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||    
T  21973968 ttgtgcaacaagattaacaatgagtggttaaatgatttgatgatatgttacactgagcgggagatattcaaatcacttgatgacattgatattattcgaa 21973869  T
Q  178 cattcatttcaatgaggtctcgaaaagagcatttacctcctaattttat 226  Q
    ||||||   ||| ||  ||||| |||| |||||||||||||||||||||    
T  21973868 cattcaccgcaaagaaatctcggaaagggcatttacctcctaattttat 21973820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 11843950 - 11843899
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  11843950 catttacctcctaattttatttagcacactattggtaggttatatttcatct 11843899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 30054875 - 30054997
Alignment:
Q  137 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    |||||||||||||||| ||||| || ||||  |||||||||| |||    ||| ||||| ||  |||   ||||||||||||||||||||||| |||| |    
T  30054875 ggagatattcaagtcacttgatcatattgacattattcgaaccttctccgcaaagaggtatcataaatgacatttacctcctaattttatttagcacatt 30054974  T
Q  237 attgacaggttatatttcatctc 259  Q
    ||||||| ||||| |||||||||    
T  30054975 attgacacgttatgtttcatctc 30054997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 170500 - 170445
Alignment:
Q  208 atttacctcctaattttatttaccacactattgac-aggttatatttcatctcact 262  Q
    |||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||    
T  170500 atttacctcctaattttatttagcacattattggcaaggttatatttcatctcact 170445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 33489827 - 33489867
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtt 247  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  33489827 catttacctcctaattttatttagcacactattgacgggtt 33489867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 41972302 - 41972262
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtt 247  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  41972302 catttacctcctaattttatttagcacactattgacgggtt 41972262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 28463203 - 28463252
Alignment:
Q  191 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattg 240  Q
    ||||||| | |||| ||||| |||||||||||||||||| ||||||||||    
T  28463203 gaggtcttggaaagggcattcacctcctaattttatttagcacactattg 28463252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 51053101 - 51053145
Alignment:
Q  215 tcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||||||||| ||||||||||| || |||||||| |||||    
T  51053101 tcctaattttatttagcacactattgagagattatattttatctc 51053145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 256
Target Start/End: Original strand, 3055482 - 3055655
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||    
T  3055482 caacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattc 3055581  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 256  Q
        ||||||||||||  |||  |||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  3055582 cgcgcaatgaggtctcataaatggcatttacctcctaattttatttagcacactattgacaatttatgtttcat 3055655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 203846 - 204026
Alignment:
Q  85 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 177  Q
    |||||||||||||||||| ||||||| |  ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||    
T  203846 ttgtgcaacaagatcaacaatgtgta-taaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaa 203944  T
Q  178 cattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||    || ||||||||| ||||  ||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  203945 cattcaccggaaagaggtctcggaaaggacatttacctcctaattttatttagcacactattgacaaattatatttcatctc 204026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 23244745 - 23244569
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtta-------caggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| ||||||||||||||||||||||||       | | || ||||| ||||| |||||||||||||| ||||| |||||||     
T  23244745 caacaagatcaacgatgtgtcgttcaatgacttgatgatatgttatgtcgagcggaagttattctagtcacttgatgatgttgatattatttgaacatta 23244646  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| ||||||||  |||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  23244645 accgcaacgaggtctcagaaagggcatgtacctgctaattttatttaccacactattgacagattatatttcatctc 23244569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 8785782 - 8785958
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||||       |||||||||||| ||| |||||||| ||||| ||||||||||||||    
T  8785782 caacaagatcaacgatgtgtggttcaatgacttgataatatattacatcaagcgggagatattcaattcagttgatgatattgatattattcgaacattc 8785881  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   |||  ||||||||||||| |   |||||||||||||||||||| || | |||||||||||||| |||||||||    
T  8785882 accgcaaataggtctcgaaaagggttcttacctcctaattttatttagcatattattgacaggttatgtttcatctc 8785958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 1280377 - 1280522
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||| ||||||||| |||||| ||||||||| ||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  1280377 gcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 1280476  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatt 227  Q
    ||   ||| ||||||||| |||  ||||||||||||||||||||||    
T  1280477 caccgcaaagaggtctcggaaaaggcatttacctcctaattttatt 1280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 11852715 - 11852891
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||       ||||||||| || ||| |||||||||||||| |||||||||||||     
T  11852715 caacaagatgaaagatgtgtggttcaatgacttgatgatatgttacaccgaacgggagatatttaactcacttgatgatgttgatattattcgaacattt 11852814  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| |||||||   |||||| |||||||| ||||||||||||| |||||||||||||  |||| |||||||||    
T  11852815 aacacaaagaggtctaagaaagagtatttaccttctaattttatttagcacactattgacaaattatctttcatctc 11852891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 22713045 - 22712898
Alignment:
Q  111 gttcaatgacttgatgatatgttacaggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatt 210  Q
    |||||||||||||||||||||   | || |||||||| |||| |||||||||||||| |||||| ||||||||   ||| ||||||||  ||||||||||    
T  22713045 gttcaatgacttgatgatatgag-cgggggatattcatgtcacttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagagcatt 22712947  T
Q  211 tacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||||||||||||| |||||||||| || ||||| || ||||||    
T  22712946 tacctcctaattttatttagcacactattgtcatgttatgttacatctc 22712898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 27168924 - 27168802
Alignment:
Q  137 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||    |||||||||||  |||| |||||||||||||||||||||||| ||||||    
T  27168924 ggagatattcaagtcacttgataatgttgatattattcgaacattcaccgaaatgaggtctcataaagggcatttacctcctaattttatttagcacact 27168825  T
Q  237 attgacaggttatatttcatctc 259  Q
    ||||   |||||| |||||||||    
T  27168824 attggatggttatgtttcatctc 27168802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 2228971 - 2229091
Alignment:
Q  139 agatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaa-aagagcatttacctcctaattttatttaccacacta 237  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||||  ||| ||||| || |  ||| |||||||||||||||||||||||| ||| |||    
T  2228971 agatatttaagtcatttgatgatgttgatattatttgaacattcatcgcaaagaggt-tctaggaagggcatttacctcctaattttatttagcacgcta 2229069  T
Q  238 ttgacaggttatatttcatctc 259  Q
    |||  |||||||||||||||||    
T  2229070 ttggtaggttatatttcatctc 2229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 259
Target Start/End: Original strand, 22541911 - 22542062
Alignment:
Q  115 aatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagc 207  Q
    ||||||||||||||||||||||       | |||||||||||||| | ||||||||| || ||||||||||||||  |  || |||||| || |||| ||    
T  22541911 aatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcgaacattccctcgaaagaggtcgcggaaagggc 22542010  T
Q  208 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||| ||||    
T  22542011 atttacctcataattttatttagcacgctattgtcaggttatatttcttctc 22542062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 26540831 - 26540674
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  26540831 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 26540732  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactatt 239  Q
    ||   ||| ||  ||||  |||| ||||||||||||||||||||| || ||| |||||    
T  26540731 caccgcaaagaaatctcagaaagggcatttacctcctaattttatctagcacgctatt 26540674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 19519053 - 19518971
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttattta 229  Q
    |||||| |||||||||||||| |||||||||||||||   ||| ||||| | | ||||  |||||||| ||||||||||||||    
T  19519053 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtattggaaaggtcatttaccacctaattttattta 19518971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 28801427 - 28801467
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtt 247  Q
    |||||| |||||||||||||||| | |||||||||||||||    
T  28801427 catttaactcctaattttatttagctcactattgacaggtt 28801467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 38269442 - 38269402
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggtt 247  Q
    ||||||||||||||||||||||  |||||||||| ||||||    
T  38269442 catttacctcctaattttatttggcacactattggcaggtt 38269402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 31989028 - 31989204
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  31989028 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 31989127  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    || |  || |||||| || |||| |||||||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  31989128 cactcgaaagaggtcgcggaaagggcatttacctcctaattttatttagcacgccattaacaggttatatttcatct 31989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 51261979 - 51262145
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    ||||||||||||||| |||| || |||||| ||||||||||||||||       | |||||||||||||| |||||||||||||| ||||||||||||||    
T  51261979 caacaagatcaacgaagtgtggtacaatgaattgatgatatgttacactaagcggaagatattcaagtcacttgatgatgttgatattattcgaacattc 51262078  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 249  Q
    ||   || ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  51262079 atcgtaaagaggtcttgaaaagaacatttacctcctaattttatttagcacactattgacaggttat 51262145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 24908569 - 24908393
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||  |||| ||||||||| |||||||||||||    
T  24908569 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcaggagatattcaagtcgcttgaagatgttgatattattcgaacatt 24908470  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    || |  || |||||| || |||| | |||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  24908469 cactcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattcacaggttatatttcatct 24908393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 53710397 - 53710573
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||  | ||| |||||||||||||| |||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  53710397 gcaacaagatcaacaatggatggttgaatgacttgatgatctgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 53710496  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    || |  || |||||| || |||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  53710497 cactcgaaagaggtcacggaaagggcatttacctcctaattttatttagcacgctattgacaggttatattttatct 53710573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 256
Target Start/End: Original strand, 43137126 - 43137299
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  43137126 gcaacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 43137225  T
Q  182 catttcaatgaggtctc-gaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 256  Q
    |    ||| |||||||| |||||| | |||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  43137226 cgccgcaa-gaggtctcagaaaag-gtatttacctcctaattttatttagcacactattggcagattatatttcat 43137299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 37382045 - 37381871
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    ||||||||||||||||||||| ||| ||||||| |||||||| |||||        ||||||||||||||||||||||||||| || |||||||||||||    
T  37382045 gcaacaagatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatgagatattcaagtcatttgatgatgtttatattattcgaacatt 37381946  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 256  Q
    || | ||| ||||||||| |||   ||||| ||||||||||||||| | ||| ||||||||||||||||||||||    
T  37381945 cactgcaaagaggtctcggaaatgacatttgcctcctaattttattcagcacgctattgacaggttatatttcat 37381871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 3857048 - 3856875
Alignment:
Q  93 caagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatt 185  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||        ||||||||||||||||||||||||||||||| |||||| ||||||||      
T  3857048 caagatcaacgatgtgtggttaaatgacttgatgacatgttactcagagtgggagatattcaagtcatttgatgatgttgatattattcaaacattcacc 3856949  T
Q  186 tcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
     ||| ||||||||  |||||  |||||||||||||||||||||| |||| ||||| || || || |||||||||    
T  3856948 gcaaagaggtctcagaaagaaaatttacctcctaattttatttagcacattattggcatgtaatgtttcatctc 3856875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 24988921 - 24988812
Alignment:
Q  150 tcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 249  Q
    |||||||||||||||||| |||||||||||||||   ||| ||||||||| |||| |||| || |||||||||||||||| |||||||||| ||| ||||    
T  24988921 tcatttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatgtatctcctaattttatttagcacactattgccagattat 24988822  T
Q  250 atttcatctc 259  Q
     |||||||||    
T  24988821 gtttcatctc 24988812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 15667973 - 15668111
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||| |       |||||||||||||||| |||||||||||||| |||||||||||| |    
T  15667973 caacaagatcaaggatgtgtggttcaataacttgatgatatgttataccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatgc 15668072  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaat 221  Q
    |   ||| ||||| ||| |||  ||||||||||||||||    
T  15668073 acaacaaagaggtatcggaaaaggcatttacctcctaat 15668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 22934910 - 22934798
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 246  Q
    |||||| |||||||||||||| ||||| |||||||||   ||| ||||||||| ||||  |||||||||| ||||||| ||||  |||||||||| |  |    
T  22934910 aagtcacttgatgatgttgatattattagaacattcaccgcaaagaggtctcggaaaggtcatttacctcttaattttgtttaagacactattgatatat 22934811  T
Q  247 tatatttcatctc 259  Q
    |||||||||||||    
T  22934810 tatatttcatctc 22934798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 51408666 - 51408609
Alignment:
Q  201 aaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  51408666 aaagggcatttacctcctaattttatttagcacgctattgacatgttatatttcatct 51408609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 38282515 - 38282563
Alignment:
Q  191 gaggtctcgaaaagagcatttacctcctaattttatttaccacactatt 239  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||    
T  38282515 gaggtctcggaaagagcatttacctcataattttatttagcacactatt 38282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 9743379 - 9743444
Alignment:
Q  194 gtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |||||| | |||| ||||||||| |||||||||||| ||||||||||  ||||||| |||||||||    
T  9743379 gtctcggagagagtatttacctcgtaattttatttagcacactattggtaggttatgtttcatctc 9743444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 43585933 - 43585979
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggttatattt 253  Q
    ||||||||||||||||||||||| ||| |||||  ||||||||||||    
T  43585933 catttacctcctaattttatttagcacgctattatcaggttatattt 43585979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 12539574 - 12539749
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtta------caggagatattcaagtcatttgatgatgttgattttattcgaacattca 183  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||      ||  |||||||||||||| |||||||||||||| |||||||||||||||    
T  12539574 caacaagatcaacaatgcgtggttcaatgacttgatgatatgttaaccgagcataagatattcaagtcacttgatgatgttgatattattcgaacattca 12539673  T
Q  184 tttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
       ||| ||||||| | ||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  12539674 ccgcaaagaggtcttggaaagaacatttacctcctaattttatttagcacactattgacacgttatgtttcatctc 12539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 19952007 - 19951833
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| |||||||| | |||||||||||||| ||||||| |||        ||||||||||||||| |||||||||||||| |||||||||||||    
T  19952007 gcaacaagattaacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattattcgaacatt 19951908  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 256  Q
    ||   ||| |||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  19951907 caccgcaaagaggtctcgaaaagggcatttaccttctaatttaatttagcacactattgacaggttatatttcat 19951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 259
Target Start/End: Complemental strand, 35649831 - 35649659
Alignment:
Q  94 aagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcattt 186  Q
    |||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||  |||||||| |     
T  35649831 aagatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcatttgatgatgttgatattattgaaacattcactg 35649732  T
Q  187 caatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||| ||| ||||||||||  ||||||| |||||||||||||||  ||| | |||| |||||||||||||||||    
T  35649731 caaagagatctcgaaaaggacatttacttcctaattttatttagtacatttttgataggttatatttcatctc 35649659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 33453364 - 33453190
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgtt-aca-------ggagatattcaagtcatttgatgatgttgattttattcgaacat 180  Q
    ||||||||||||||||||||| || ||||||||| || ||||||| |||       ||||||||| |||||| |||||||||||||| ||||||||||||    
T  33453364 gcaacaagatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcgggagatatttaagtcacttgatgatgttgatattattcgaacat 33453266  T
Q  181 tcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 256  Q
    |||   ||| ||||| ||  ||||||||||||||||||||||||||||| || ||||||| || ||||||||||||    
T  33453265 tcaccgcaaagaggtatcagaaagagcatttacctcctaattttatttagcagactattggcaagttatatttcat 33453190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 34317642 - 34317482
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||        ||||||||||||||| || ||||||||||| || |||      ||    
T  34317642 caacaagatcaatgatgtgtggttcaatgacttgatgatatgttacaccgagtaagagatattcaagtcacttcatgatgttgatattgttc------tc 34317549  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 249  Q
    |   ||| |||||||| |||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  34317548 accgcaaagaggtctcaaaaagagcatttacctcctaattttaattagcacactattggcaggttat 34317482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 22483548 - 22483725
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| ||| |||  | ||| ||||||||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  22483548 gcaacaagattaacaatgaatggttaaatgacttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 22483647  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||   ||| ||  ||||| |||| ||||||||||||||||||||| || ||| |||||  ||||| ||||| ||||||    
T  22483648 caccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatttgcaggtaatattccatctc 22483725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 22464669 - 22464847
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||| ||||||    
T  22464669 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacatt 22464768  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 259  Q
    ||   ||| ||  |||||||||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  22464769 caccgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatttgccaggtaatattccatctc 22464847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 34526351 - 34526529
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  34526351 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 34526450  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 259  Q
    ||   ||| ||  ||||| |||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  34526451 caccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatttggcaggtaatattccatctc 34526529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 31392486 - 31392554
Alignment:
Q  169 ttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta 237  Q
    ||||||||||||| |  |||| |||||||||||||| ||||||||||| |||||||||||| |||||||    
T  31392486 ttattcgaacatttacctcaaagaggtctcgaaaagggcatttacctcttaattttatttagcacacta 31392554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 18426072 - 18425956
Alignment:
Q  147 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatt----taccacactattgac 242  Q
    |||||| ||||| |||||||| |||||||||||||||    || |||||||| ||||    ||||||||||||||||||||    || ||||||||||||    
T  18426072 aagtcacttgataatgttgatattattcgaacattcaccgtaaagaggtctcaaaaatgttatttacctcctaattttattaatttatcacactattgac 18425973  T
Q  243 aggttatatttcatctc 259  Q
    | |||||||||||||||    
T  18425972 aagttatatttcatctc 18425956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 13309707 - 13309765
Alignment:
Q  201 aaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |||| ||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||    
T  13309707 aaagggcatttacctcataatattatttagcacactattgacagattatatttcatctc 13309765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 13308771 - 13308816
Alignment:
Q  138 gagatattcaagtcatttgatgatgttgattttattcgaacattca 183  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||    
T  13308771 gagatattcaagtcacttgatgatgttgatattattcgaacattca 13308816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 34907640 - 34907758
Alignment:
Q  138 gagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta 237  Q
    |||||| ||| |||| |||||| ||||||| | |||| |||||||||   |  || || |||||||| ||||||||||||||||   |||||  ||||||    
T  34907640 gagatactcaggtcacttgatggtgttgatataattcaaacattcatcggagagaagtttcgaaaagggcatttacctcctaat---atttaagacacta 34907736  T
Q  238 ttgacaggttatatttcatctc 259  Q
    ||||| ||||||||||||||||    
T  34907737 ttgacgggttatatttcatctc 34907758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 7886706 - 7886661
Alignment:
Q  210 ttacctcctaattttatttaccacactattgacaggttatatttca 255  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||    
T  7886706 ttacctcctaattttatttagcacactattgatatgttatatttca 7886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 31392927 - 31392972
Alignment:
Q  214 ctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||    
T  31392927 ctcctaattttatttagcacactattgacaggttatgttacatctc 31392972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 35651605 - 35651564
Alignment:
Q  51 ttggttgatagaacaagtattgagaatatgaatgttgtgcaa 92  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  35651605 ttggttgatagaacaagtattcagaatgtgaatgttgtgcaa 35651564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 26656392 - 26656340
Alignment:
Q  207 catttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||||||||||||||||  |||||||||   |||||||||||||||||    
T  26656392 catttacctcctaattttatttcgcacactattagtaggttatatttcatctc 26656340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 1954951 - 1955005
Alignment:
Q  205 agcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||||||||| | ||||||||||||| |||  ||||||||| ||||||||||||||    
T  1954951 agcatttactttctaattttatttagcacgttattgacagattatatttcatctc 1955005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 45121340 - 45121396
Alignment:
Q  191 gaggtctcg-aaaagagcatttacctcctaattttatttaccacactattgacaggtt 247  Q
    ||||||||| |||||| |||||||||||||||||||||||  ||||||||| ||||||    
T  45121340 gaggtctcggaaaaga-catttacctcctaattttatttagaacactattggcaggtt 45121396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 12180700 - 12180525
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||       ||||| |||||||||| |||||| ||||||| ||||||||||||||    
T  12180700 caacaagatcaacattgtgtggttcaatgacttgatgatatgttacaccgagtgggagaaattcaagtcacttgatgttgttgatattattcgaacattc 12180601  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
    |   ||| |||||||||  ||| |||||||||| ||||||||||||| |||| |||||||||||||| ||||||||    
T  12180600 accgcaaagaggtctcgggaagggcatttaccttctaattttatttagcacattattgacaggttatgtttcatct 12180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 11970964 - 11971135
Alignment:
Q  94 aagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcattt 186  Q
    |||||||||||||||| ||||||||||||||| ||||||||||       | |||||||||||||| |||||||||||||| || | ||||||||||       
T  11970964 aagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagcggaagatattcaagtcacttgatgatgttgatattttgcgaacattcaccg 11971063  T
Q  187 caatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
     || ||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  11971064 aaa-gaggtctcagaaagggcatttacctcctaattttatttagcacactattgacaggttatgtttcatctc 11971135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 3050917 - 3051041
Alignment:
Q  137 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    |||||||||||||||| |||||||||||||| |||||| ||||||||    || ||||||||| |||||||||||||| |||||||||||||| ||||||    
T  3050917 ggagatattcaagtcacttgatgatgttgatattattcaaacattcaccggaaagaggtctcggaaagagcatttaccacctaattttatttagcacact 3051016  T
Q  237 attgaca--ggttatatttcatctc 259  Q
    |||||||  ||||||||||||||||    
T  3051017 attgacacgggttatatttcatctc 3051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 259
Target Start/End: Original strand, 25599159 - 25599331
Alignment:
Q  97 atcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcattt--- 186  Q
    |||||||| |||  |||||||||||||||| |||||||||       ||||||| |||||||| |||||||||||||| ||||||||||||||||         
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcgaacattcatcatcg 25599258  T
Q  187 caatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||| ||||||||| |||| |||||||| ||||||||| ||||| |||||||||| || |||||||||||||||    
T  25599259 caaagaggtctcggaaagggcatttacgtcctaatttgatttaacacactattggcaagttatatttcatctc 25599331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 24074411 - 24074588
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||||       |||||||||||||| | |||||||||||||| |||||||||||||    
T  24074411 gcaacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagttacttgatgatgttgatattattcgaacatt 24074510  T
Q  182 c-atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    | |    || ||||||||| || || ||||||||||||||||||||||| |||  | ||||||| ||||||||||||||    
T  24074511 caaccggaaagaggtctcggaatga-catttacctcctaattttatttagcacgtttttgacagattatatttcatctc 24074588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 25340445 - 25340620
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||| |||||||  || | ||| ||||||||||||||||       | ||||||| |||||| |||||||||||||| ||||||||||||||    
T  25340445 caacaagatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttgatattattcgaacattc 25340544  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |    || ||||||||  |||| |||||||||||||||||||| ||| |||||||||| ||| |||| |||||||||    
T  25340545 accataaagaggtctcagaaagtgcatttacctcctaatttta-ttaacacactattggcagattatgtttcatctc 25340620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 1296563 - 1296684
Alignment:
Q  137 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    |||||||||||||||| |||||||| || || |||||| || |||||    || ||||||||| ||||  |||||||||||| |||||||||||||||||    
T  1296563 ggagatattcaagtcacttgatgatattaatattattcaaatattcacaataaagaggtctcggaaaggccatttacctccttattttatttaccacact 1296662  T
Q  237 attgacaggttatatttcatct 258  Q
    || | |||||||||||||||||    
T  1296663 atcggcaggttatatttcatct 1296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 30621227 - 30621324
Alignment:
Q  137 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacac 235  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||| |  || ||||||||| ||||  ||||||||||||||||||||||| |||||    
T  30621227 ggagataatcaagtcacttgatgatgttgatattattcgaacattca-tcgaaagaggtctcggaaaggacatttacctcctaattttatttaacacac 30621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 32442078 - 32441973
Alignment:
Q  154 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 253  Q
    |||||||||||||| ||||||||||||||||  ||| ||||| ||| |||| ||||||||||| |||||||||||| ||||| |||| || ||||| |||    
T  32442078 ttgatgatgttgatattattcgaacattcatcccaaagaggtatcggaaagggcatttacctcttaattttatttagcacaccattggcaagttatgttt 32441979  T
Q  254 catctc 259  Q
     |||||    
T  32441978 tatctc 32441973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 22257738 - 22257696
Alignment:
Q  51 ttggttgatagaacaagtattgagaatatgaatgttgtgcaac 93  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  22257738 ttggttgatagaacaagtattgagaatgcgaatgttgtgcaac 22257696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 24696100 - 24696135
Alignment:
Q  58 atagaacaagtattgagaatatgaatgttgtgcaac 93  Q
    |||||||||||||||||||| |||||||||||||||    
T  24696100 atagaacaagtattgagaatgtgaatgttgtgcaac 24696135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 259917 - 260094
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||       ||| |||||||||||| |||||||  ||||| |||||||||||||    
T  259917 gcaacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagtcacttgatgacattgatattattcgaacatt 260016  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    ||   ||| ||||||||| |||  ||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||    
T  260017 caccgcaaagaggtctcggaaatggcatttaccacctaattttatttagcacgctattgacagattatatttcatctc 260094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 17740 - 17916
Alignment:
Q  90 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 182  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||       ||||||||| |||||| ||| |||||||||| ||||||||||||||    
T  17740 caacaagatcaacgatgtgtggttcaatgacttgatgatacgttacatcgagcgggagatatttaagtcacttgctgatgttgatattattcgaacattc 17839  T
Q  183 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 259  Q
    |   ||| ||||||||  ||||  |||||| |||||||||||||||| |||||||||||||| |||  |||||||||    
T  17840 accgcaaagaggtctccgaaaggacatttaactcctaattttatttagcacactattgacagattacgtttcatctc 17916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 214337 - 214161
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||||||| || ||| ||| ||||||||||||||||||||||       |||||||||| ||||| |||||||||||||| |||||||||||||    
T  214337 gcaacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatt 214238  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 258  Q
     | |  || |||||| || |||| | |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  214237 aactcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 214161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 1450 - 1572
Alignment:
Q  137 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||| |||  |||||| ||||||||||||||||| || |||    
T  1450 ggagatattcaaatcacttgatgatgttgatattattcgaacattcattgcaaagaggtctcggaaatggcatttgcctcctaattttatttagcatact 1549  T
Q  237 attgacaggttatatttcatctc 259  Q
    || | || | ||| |||||||||    
T  1550 atcggcatgctatgtttcatctc 1572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 950 - 1059
Alignment:
Q  150 tcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 249  Q
    |||||||||||||||||| |||||||||||||||   ||| ||||||||  |||| ||||||| |||||||||||||||| |||||||||| ||| ||||    
T  950 tcatttgatgatgttgatattattcgaacattcaccgcaaagaggtctccgaaagggcatttatctcctaattttatttagcacactattgccagattat 1049  T
Q  250 atttcatctc 259  Q
     |||||||||    
T  1050 gtttcatctc 1059  T

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Target: scaffold0002 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 435469 - 435350
Alignment:
Q  139 agatattcaagtcatttgatgatgttgattttattcgaacat--tcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 236  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||  | |   | | ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  435469 agatattcaagtcacttgattatgttgatattattagaacatattaaccgcgaagaggtctcgaaaaggacatttacctcctaattttatttagcacact 435370  T
Q  237 attgacaggttatatttcat 256  Q
    |||| ||| |||||||||||    
T  435369 attgtcagattatatttcat 435350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 15813 - 15991
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  15813 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 15912  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 259  Q
    ||   ||| ||  ||||| |||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  15913 caccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatttgccaggtaatattccatctc 15991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 259
Target Start/End: Original strand, 197104 - 197282
Alignment:
Q  89 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 181  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||| ||||||    
T  197104 gcaacaagattaacaatgagtggttaaatgaattgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacatt 197203  T
Q  182 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 259  Q
    ||   ||| ||  |||||||||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  197204 caccgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatttgccaggtaatattccatctc 197282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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