View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_high_19 (Length: 252)
Name: NF14879_high_19
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 6775470 - 6775243
Alignment:
| Q |
16 |
tactatacgcgtgttatgaaataaacttgtaggttaagctnnnnnnnntgaataaactaagataacatcaaga---ccaaaaaccatcaagtcaaccaaa |
112 |
Q |
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| T |
6775470 |
tactatacgcgtgttatgaaataaacttgtaggctaagctaaaaaaaatgaataaactaagata-catgaagaagaccaaaaaccatcaagtcaaccaaa |
6775372 |
T |
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| Q |
113 |
gca----tattttgtatataacaataagaaagatgagttcataagatcatatgcattttctttctttttacaaaacatttgattctactacattaataac |
208 |
Q |
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| T |
6775371 |
ttatatttattttctatataacaatgagaaagatgagttcataagatcatatgcattttctttctttttacaaaacatttgattctactacattaataac |
6775272 |
T |
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| Q |
209 |
aacaacaaaagagttacatatatagtttt |
237 |
Q |
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| T |
6775271 |
aacaacaaaagagttacatatatagtttt |
6775243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 17491590 - 17491729
Alignment:
| Q |
73 |
taagataacatcaaga---ccaaaaaccatcaagtcaaccaaagcatattttgtatataacaataagaaagatgagttcataagatcatatgcattttct |
169 |
Q |
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| T |
17491590 |
taagataacatcaagaagaccaaaaaccatcaagtcaaccaaagcatattttctatataacaataaga----tgagttcataagatcatatgcattttct |
17491685 |
T |
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| Q |
170 |
ttctttttacaaaacatttgattctactacattaataacaacaa |
213 |
Q |
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| T |
17491686 |
ttctttttacaaaacatttgattctactacattaataacaacaa |
17491729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 17491527 - 17491564
Alignment:
| Q |
18 |
ctatacgcgtgttatgaaataaacttgtaggttaagct |
55 |
Q |
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| T |
17491527 |
ctatacgcgtgttgtgaaataaacttgtaggctaagct |
17491564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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