View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14879_high_21 (Length: 237)

Name: NF14879_high_21
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14879_high_21
NF14879_high_21
[»] chr5 (15 HSPs)
chr5 (1-221)||(8529402-8529622)
chr5 (1-221)||(8535966-8536186)
chr5 (28-201)||(9074179-9074352)
chr5 (28-221)||(1599721-1599914)
chr5 (137-201)||(8547524-8547588)
chr5 (59-117)||(8637396-8637454)
chr5 (60-108)||(2904537-2904585)
chr5 (65-108)||(2844594-2844637)
chr5 (65-108)||(2856421-2856464)
chr5 (65-105)||(8644747-8644787)
chr5 (65-108)||(2874031-2874074)
chr5 (59-98)||(11354043-11354082)
chr5 (59-98)||(11373311-11373350)
chr5 (139-195)||(8644833-8644889)
chr5 (148-192)||(9004088-9004132)
[»] chr4 (1 HSPs)
chr4 (1-221)||(9443563-9443783)
[»] chr7 (2 HSPs)
chr7 (1-221)||(48361273-48361493)
chr7 (2-199)||(35780279-35780491)
[»] chr6 (1 HSPs)
chr6 (136-221)||(16716982-16717067)
[»] scaffold0627 (1 HSPs)
scaffold0627 (145-201)||(5293-5349)
[»] chr1 (1 HSPs)
chr1 (1-85)||(5131232-5131316)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8529402 - 8529622
Alignment:
Q  1 aaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529402 aaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaa 8529501  T
Q  101 ccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8529502 ccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttc 8529601  T
Q  201 caaaagatgggtcagacaaac 221  Q
    |||||||||||||||||||||    
T  8529602 caaaagatgggtcagacaaac 8529622  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8535966 - 8536186
Alignment:
Q  1 aaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaa 100  Q
    |||| ||| |||||||||| |||||  ||||||| ||||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| ||||||    
T  8535966 aagggtcaaacgctcaaactcccacacattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaa 8536065  T
Q  101 ccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttc 200  Q
    |||||||| ||| || ||||||| ||| || |||  | | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  8536066 ccagcttgtcctagccttcttacccgattttgatccgcaatagattcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttc 8536165  T
Q  201 caaaagatgggtcagacaaac 221  Q
    |||||||||||||||||||||    
T  8536166 caaaagatgggtcagacaaac 8536186  T

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Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 9074352 - 9074179
Alignment:
Q  28 attggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcga 127  Q
    ||||||| ||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||  ||||||||| |||    
T  9074352 attggcacgtttaccatgtcttatccacattcttattaccttatattcattagtattaggttggaatccaaaaccaacttgtcctaccattcttacccga 9074253  T
Q  128 gttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttcc 201  Q
    |||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  9074252 gttcgattcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttcc 9074179  T

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Target: chr5; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 1599914 - 1599721
Alignment:
Q  28 attggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcga 127  Q
    ||||||| ||||||||| ||| | || || | |||| ||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||| |||    
T  1599914 attggcacgtttaacatatctcaccctcatgtttatcaccttatattcattagttttaggttggaaaccaaaagcagctcgtccttgccttcctacccga 1599815  T
Q  128 gttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaac 221  Q
    ||| |||| |  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  1599814 gtttgattcgcggtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaac 1599721  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 8547588 - 8547524
Alignment:
Q  137 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttcc 201  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| ||||||||    
T  8547588 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttcc 8547524  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 8637396 - 8637454
Alignment:
Q  59 cttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcat 117  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||    
T  8637396 cttatcaccttatattcattagttttaggttggaaaccaaaaccaacttgtcctcgcat 8637454  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 2904585 - 2904537
Alignment:
Q  60 ttattaccttatattcattagttttaggttggaatccaaaaccagcttg 108  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  2904585 ttatcaccttatattcattagttttgggttggaaaccaaaaccagcttg 2904537  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 2844637 - 2844594
Alignment:
Q  65 accttatattcattagttttaggttggaatccaaaaccagcttg 108  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  2844637 accttatattcattagttttgggttggaaaccaaaaccagcttg 2844594  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 2856464 - 2856421
Alignment:
Q  65 accttatattcattagttttaggttggaatccaaaaccagcttg 108  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  2856464 accttatattcattagttttgggttggaaaccaaaaccagcttg 2856421  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 8644747 - 8644787
Alignment:
Q  65 accttatattcattagttttaggttggaatccaaaaccagc 105  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  8644747 accttatattcattagttttaggttggaagccaaaagcagc 8644787  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 2874074 - 2874031
Alignment:
Q  65 accttatattcattagttttaggttggaatccaaaaccagcttg 108  Q
    |||||||||||||||||||| |||||||| | ||||||||||||    
T  2874074 accttatattcattagttttgggttggaaactaaaaccagcttg 2874031  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 11354082 - 11354043
Alignment:
Q  59 cttattaccttatattcattagttttaggttggaatccaa 98  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  11354082 cttatcaccttatattcattagttttaggttggaagccaa 11354043  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 11373311 - 11373350
Alignment:
Q  59 cttattaccttatattcattagttttaggttggaatccaa 98  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  11373311 cttatcaccttatattcattagttttaggttggaagccaa 11373350  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 8644833 - 8644889
Alignment:
Q  139 agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgg 195  Q
    ||||| || |||||||||||| |||||||| |||||||| ||||| || ||||||||    
T  8644833 agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatgg 8644889  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 9004088 - 9004132
Alignment:
Q  148 aggaagtcttatgaactcccccgtgactgggttgcagatcactaa 192  Q
    ||||||||||||||| ||||| |||||||||||||| | ||||||    
T  9004088 aggaagtcttatgaattccccagtgactgggttgcataccactaa 9004132  T

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Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9443563 - 9443783
Alignment:
Q  1 aaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443563 aaggatcacacgctcaaacacccactgattggcttgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaa 9443662  T
Q  101 ccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9443663 ccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttc 9443762  T
Q  201 caaaagatgggtcagacaaac 221  Q
    |||||||||||||||||||||    
T  9443763 caaaagatgggtcagacaaac 9443783  T

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Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48361493 - 48361273
Alignment:
Q  1 aaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaa 100  Q
    ||||||||||||||||||| |||||  ||||||| ||||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| ||||||    
T  48361493 aaggatcacacgctcaaactcccacgcattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaa 48361394  T
Q  101 ccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttc 200  Q
    |||||||| |||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  48361393 ccagcttgtccttgcattcttacccgagttcgatacgcagtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttc 48361294  T
Q  201 caaaagatgggtcagacaaac 221  Q
    | |||||||| ||||||||||    
T  48361293 ccaaagatggatcagacaaac 48361273  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 35780279 - 35780491
Alignment:
Q  2 aggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaac 101  Q
    ||||| ||||| ||||||||||| | ||||||| ||| ||||||||||||||| |   |||| ||||||||||||||||||||||||||||| |||||||    
T  35780279 aggataacacgatcaaacacccaatcattggcacgttgaacatgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaac 35780378  T
Q  102 cagcttgaccttgcattcttactcga---gt------tc------gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagat 186  Q
    ||||||| ||||||||||||||||||   ||      ||      || | ||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  35780379 cagcttgtccttgcattcttactcgatccgtatttaatcttaaaggagtcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaat 35780478  T
Q  187 cactaatgggttt 199  Q
    |||||| ||||||    
T  35780479 cactaaagggttt 35780491  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 16716982 - 16717067
Alignment:
Q  136 tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaac 221  Q
    |||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||  |||||||||  || ||| ||||||||||    
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaac 16717067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 5293 - 5349
Alignment:
Q  145 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttcc 201  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  5293 ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttcc 5349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5131232 - 5131316
Alignment:
Q  1 aaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagtttta 85  Q
    ||||||||||||||||||| ||||  ||  |||| |||||||||| |||| ||| |   |||| |||||||||||||||||||||    
T  5131232 aaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatatttttatcaccttatattcattagtttta 5131316  T

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