View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14879_high_3 (Length: 473)
Name: NF14879_high_3
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 126 - 458
Target Start/End: Complemental strand, 35302740 - 35302408
Alignment:
| Q |
126 |
taccctaaaaccctcaaaaaccctacctccattcacctctcttcttacctcgatttcacaaactttttctacaacaattgccccggcgtcgttacctttt |
225 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35302740 |
taccctaaaaccctccaaaaccctacctccattcacctctcttcttacctcgatttcacaaactttttctacaacaattgccccggcgtcgttacctttt |
35302641 |
T |
|
| Q |
226 |
ccgacgctaactccgtcgctcaaaccgccacatttcacctccctgattttttatctcgagaatgttctaccgtgttctcacccacacccaatcataaacc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35302640 |
ccgacgctaactccgtcgctcaaaccgccacatttcacctccctgattttttatctcgagaatgttctaccgtgtgctcacccacacccaatcataaacc |
35302541 |
T |
|
| Q |
326 |
ttctcccattgttccttctgaatactattacattacccgcgaaattgaatcatggaacaattttccagttacatactcaaactctgtttttcgcgcaatt |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35302540 |
ttctcccattgttccttctgaatactattacattacccgcgaaattgaatcatggaacaattttccaattacatactcaaactctgtttttcgcgcaatt |
35302441 |
T |
|
| Q |
426 |
tttggtattggaattgcaaaagagagtgaaatg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35302440 |
tttggtattggaattgcaaaagagagtgaaatg |
35302408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35302865 - 35302833
Alignment:
| Q |
1 |
tcatcccctgccttttcaatcccaaccatctca |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35302865 |
tcatcccctgccttttcaatcccaaccatctca |
35302833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University