View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14879_high_6 (Length: 364)
Name: NF14879_high_6
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 23690914 - 23691221
Alignment:
| Q |
16 |
aaaggtgactagccaaagaaatggttgcccttgcaaaggcgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaatgtatagac |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23690914 |
aaaggtgactagc-aaagaaatggttgcccttgcaaaggtgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaacgtatagac |
23691012 |
T |
|
| Q |
116 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23691013 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
23691112 |
T |
|
| Q |
216 |
catcgatcctgatcaaaacctctagtagttgcaaattgtatcgcctcaagtatagcaatcgccacaccttctatcttaaagagttttacatattgccatg |
315 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23691113 |
c----atcctgatcaaatcctctagtagttgcaaattgtatcgcctcaagtatagcaattgccacaccttctatcttaaagagttttacatattgcaatg |
23691208 |
T |
|
| Q |
316 |
cagcctccacaac |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23691209 |
cagcctccacaac |
23691221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 23707714 - 23708021
Alignment:
| Q |
16 |
aaaggtgactagccaaagaaatggttgcccttgcaaaggcgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaatgtatagac |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23707714 |
aaaggtgactagc-aaagaaatggttgcccttgcaaaggtgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaacgtatagac |
23707812 |
T |
|
| Q |
116 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23707813 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
23707912 |
T |
|
| Q |
216 |
catcgatcctgatcaaaacctctagtagttgcaaattgtatcgcctcaagtatagcaatcgccacaccttctatcttaaagagttttacatattgccatg |
315 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23707913 |
c----atcctgatcaaatcctctagtagttgcaaattgtatcgcctcaagtatagcaattgccacaccttctatcttaaagagttttacatattgcaatg |
23708008 |
T |
|
| Q |
316 |
cagcctccacaac |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23708009 |
cagcctccacaac |
23708021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 23726170 - 23726477
Alignment:
| Q |
16 |
aaaggtgactagccaaagaaatggttgcccttgcaaaggcgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaatgtatagac |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23726170 |
aaaggtgactagc-aaagaaatggttgcccttgcaaaggtgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaacgtatagac |
23726268 |
T |
|
| Q |
116 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23726269 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
23726368 |
T |
|
| Q |
216 |
catcgatcctgatcaaaacctctagtagttgcaaattgtatcgcctcaagtatagcaatcgccacaccttctatcttaaagagttttacatattgccatg |
315 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23726369 |
c----atcctgatcaaatcctctagtagttgcaaattgtatcgcctcaagtatagcaattgccacaccttctatcttaaagagttttacatattgcaatg |
23726464 |
T |
|
| Q |
316 |
cagcctccacaac |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23726465 |
cagcctccacaac |
23726477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 23744626 - 23744933
Alignment:
| Q |
16 |
aaaggtgactagccaaagaaatggttgcccttgcaaaggcgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaatgtatagac |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23744626 |
aaaggtgactagc-aaagaaatggttgcccttgcaaaggtgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaacgtatagac |
23744724 |
T |
|
| Q |
116 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23744725 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
23744824 |
T |
|
| Q |
216 |
catcgatcctgatcaaaacctctagtagttgcaaattgtatcgcctcaagtatagcaatcgccacaccttctatcttaaagagttttacatattgccatg |
315 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23744825 |
c----atcctgatcaaatcctctagtagttgcaaattgtatcgcctcaagtatagcaattgccacaccttctatcttaaagagttttacatattgcaatg |
23744920 |
T |
|
| Q |
316 |
cagcctccacaac |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23744921 |
cagcctccacaac |
23744933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 24063151 - 24063458
Alignment:
| Q |
16 |
aaaggtgactagccaaagaaatggttgcccttgcaaaggcgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaatgtatagac |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24063151 |
aaaggtgactagc-aaagaaatggttgcccttgcaaaggtgtgagctaccatatcttttatctcttaataaacttaaccttaaagtttaaacgtatagac |
24063249 |
T |
|
| Q |
116 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24063250 |
atacaagacacaacgcgagaaacaatagtgttaaacttagaagagccatgatgattcgagaaagtagcattcactatatttttagagtcacacggaaaaa |
24063349 |
T |
|
| Q |
216 |
catcgatcctgatcaaaacctctagtagttgcaaattgtatcgcctcaagtatagcaatcgccacaccttctatcttaaagagttttacatattgccatg |
315 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24063350 |
c----atcctgatcaaatcctctagtagttgcaaattgtatcgcctcaagtatagcaattgccacaccttctatcttaaagagttttacatattgcaatg |
24063445 |
T |
|
| Q |
316 |
cagcctccacaac |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24063446 |
cagcctccacaac |
24063458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 23687083 - 23687151
Alignment:
| Q |
272 |
aatcgccacaccttctatcttaaagagttttacatattgccatgcagcctccacaacaataaagtgacc |
340 |
Q |
| |
|
||||||| || |||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
23687083 |
aatcgcctcatcttctatcgtaaagagttttacgtattgctatgccgcctccacaacaataaagtgacc |
23687151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 24059320 - 24059388
Alignment:
| Q |
272 |
aatcgccacaccttctatcttaaagagttttacatattgccatgcagcctccacaacaataaagtgacc |
340 |
Q |
| |
|
||||||| || |||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
24059320 |
aatcgcctcatcttctatcgtaaagagttttacgtattgctatgccgcctccacaacaataaagtgacc |
24059388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 23672106 - 23672157
Alignment:
| Q |
295 |
agagttttacatattgccatgcagcctccacaacaataaagtgaccatgatg |
346 |
Q |
| |
|
|||||||| ||||||| || || |||||| |||||||||||||||||||||| |
|
|
| T |
23672106 |
agagttttgcatattgtcaagctgcctccgcaacaataaagtgaccatgatg |
23672157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 24044382 - 24044433
Alignment:
| Q |
295 |
agagttttacatattgccatgcagcctccacaacaataaagtgaccatgatg |
346 |
Q |
| |
|
|||||||| ||||||| || || |||||| |||||||||||||||||||||| |
|
|
| T |
24044382 |
agagttttgcatattgtcaagctgcctccgcaacaataaagtgaccatgatg |
24044433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University