View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_high_9 (Length: 329)
Name: NF14879_high_9
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 47807170 - 47807465
Alignment:
| Q |
17 |
agtagagtggttggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaatt |
116 |
Q |
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| T |
47807170 |
agtagggtgattggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaatt |
47807269 |
T |
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| Q |
117 |
gcatatagatcttgctagctttttaacactactttaaatttatatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtt |
216 |
Q |
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| T |
47807270 |
gcatatagatcttgctagctttttaacgctacttta------tatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtt |
47807363 |
T |
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| Q |
217 |
taacttttaggtgttcaacatgatgaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatttctgagctctctgatgatg |
316 |
Q |
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| T |
47807364 |
taacttttaggtgttcaacatgatgaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatttctgagctctctgatgatg |
47807463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 47804608 - 47804899
Alignment:
| Q |
17 |
agtagagtggttggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaatt |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804608 |
agtagggtggttggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaatt |
47804707 |
T |
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| Q |
117 |
gcatatagatcttgctagctttttaacactactttaaatttatatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtt |
216 |
Q |
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| T |
47804708 |
gcatatagatcttgctagctttttaacgctacttta------tatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtt |
47804801 |
T |
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| Q |
217 |
taacttttaggtgttcaacatgatgaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatttctgagctctctgatga |
314 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
47804802 |
taacttttaggtgttcaacatgatcaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatctctgagctctccgatga |
47804899 |
T |
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