View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_low_1 (Length: 579)
Name: NF14879_low_1
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 564
Target Start/End: Complemental strand, 35069285 - 35068738
Alignment:
| Q |
11 |
agtagcataggaatttaggaagcattattttgataatgcttttatgccaactgtttctcttaataactaatcttacgnnnnnnnnnncaattaaaatgaa |
110 |
Q |
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| T |
35069285 |
agtagcataggaatttaggaagcattattttgataatgcttttattccaactttttctcttattaactaatgtcacgttttt-----cacttaaaatgaa |
35069191 |
T |
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| Q |
111 |
tctgaaaaattgagcataagaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggaaatgaaagagctaccnnnnnnnttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35069190 |
tctgaaaaattgagcataagaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggaaatgaaagagctaccaaaaaaattg |
35069091 |
T |
|
| Q |
211 |
ctagaaaaggtggctccattctcttaagcaatttaattttttctatcaattcaatccttcccttacacttattaatctcctctatagtttgatcaatact |
310 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35069090 |
ctagaaaacgtggctccattctcttaagcaattgaattttttctgtcaattcaatccttcccttacacttattaatctcctctatagtttgatcaatact |
35068991 |
T |
|
| Q |
311 |
taagtatggaccaagcacattaacattatatataatggaataatttgtgatgttgtgtccttttacatatggtaggtgactactnnnnnnntgcacattt |
410 |
Q |
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| T |
35068990 |
taagtatggaccaagcacattaacattatatataatggaataatttgtgatgctgtgtccttttacacatggtaggtgactactaaaaaaatgcacaatt |
35068891 |
T |
|
| Q |
411 |
tggaaaattataccatttcttgcatgctacacaatgttgtctttatcttttcttttgatgtaaaccgttgctgctattttcatcagacaannnnnnnnnc |
510 |
Q |
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| T |
35068890 |
tggaaaattataccatttcttgcatgctacacaatgttgtctttatcttttcttttgatgtaaaccgttgctgctattttcatcagacaa-ttttttttc |
35068792 |
T |
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| Q |
511 |
agtgatatgaaaaatactgctcagctacaaatacttgtttttctcatttgaatt |
564 |
Q |
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| T |
35068791 |
agtgatatgaaaaatactgctcagctacaaatacttgtttttctcatttgaatt |
35068738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 105 - 564
Target Start/End: Complemental strand, 35053280 - 35052819
Alignment:
| Q |
105 |
aatgaatctgaaaaattgagcataagaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggaaatgaaagagctaccnnnn |
204 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35053280 |
aatgaacctgaaaaattgagcataagaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggagatgaaagagctaccaaaa |
35053181 |
T |
|
| Q |
205 |
nnnttgctagaaaaggtggctccattctcttaagcaatttaattttttc--tatcaattcaatccttcccttacacttattaatctcctctatagtttga |
302 |
Q |
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| T |
35053180 |
aaattgctagaaaacgtggctccattctcttaagcaattaaaatttttctttgtcaattcaatctttcccttacacttatgaatctcctctatggtttga |
35053081 |
T |
|
| Q |
303 |
tcaatacttaagtatggaccaagcacattaacattatatataatggaataatttgtgatgttgtgtccttttacatatggtaggtgactactnnnnnnnt |
402 |
Q |
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| T |
35053080 |
tcaatacttaagtat-gaccaagcacattaacattatatataatggaataatttgtgaggttgtgtccttttacacatggtaggtgactact-aaaaaat |
35052983 |
T |
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| Q |
403 |
gcacattttggaaaattataccatttcttgcatgctacacaatgttgtctttatcttttct-tttgatgtaaaccgttgctgctattttcatcagacaa- |
500 |
Q |
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| T |
35052982 |
gcacaatttggaaaattataccatttcttgcatgctacacaatgttgtctttatcttttctgtttgatgtaaaccattgctgctattttcatcagacaat |
35052883 |
T |
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| Q |
501 |
nnnnnnnnncagtgatatgaaaaatactgctcagctacaaatacttgtttttctcatttgaatt |
564 |
Q |
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| T |
35052882 |
tttttttttcggtgatatgaaaaatactgctcagctacaaatgcttgtttttctcatttgaatt |
35052819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 35053347 - 35053312
Alignment:
| Q |
26 |
taggaagcattattttgataatgcttttatgccaac |
61 |
Q |
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| T |
35053347 |
taggaagcactattttgataatgcttttatgccaac |
35053312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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