View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_low_15 (Length: 271)
Name: NF14879_low_15
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 10144212 - 10143973
Alignment:
| Q |
12 |
gaaatgaatgcaggtatggagcaatggaagattttgcaatgtgaagcaccacatacaatgcaagggagctactacacgttattcaattgctacatttatg |
111 |
Q |
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| T |
10144212 |
gaaatgaatgcaggtatggagcaatggaagattttgcaatgtgaagcaccacatacaatgtaaggaagctactatacgtt---caattgctacatttatg |
10144116 |
T |
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| Q |
112 |
ctgggacccaggaagggaaatattgagaccccaaaggagttggtggaccttgatcacccacgtcttgatcaaccttttacttatgaagagtataggactc |
211 |
Q |
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| T |
10144115 |
ttgggacccaggaagggaaatattgagaccccaaaggagttgatggaccttgatcacccacgtctttatcaaccttttacttatgaagagtataggactc |
10144016 |
T |
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| Q |
212 |
tcagagattccataaataaggctggtgataaatatctacagac |
254 |
Q |
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| T |
10144015 |
tcagagattccataaataaggctggtgataaatatctacagac |
10143973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 10139009 - 10138770
Alignment:
| Q |
12 |
gaaatgaatgcaggtatggagcaatggaagattttgcaatgtgaagcaccacatacaatgcaagggagctactacacgttattcaattgctacatttatg |
111 |
Q |
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| T |
10139009 |
gaaatgaatgcaggtatggagcaatggaaggttttgcaatgtgaagcaccatgtacgatgcaaggaagctactacacgttattcaattgctacatttatg |
10138910 |
T |
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| Q |
112 |
ctgggacccaggaagggaaatattgagaccccaaaggagttggtggaccttgatcacccacgtcttgatcaaccttttacttatgaagagtataggactc |
211 |
Q |
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| T |
10138909 |
ttgggacccaggaagggaaatattgaggccccaaaggagttggtggaccatgatcacccacgtctttatcaatcttttacttatggagagtatagggcgc |
10138810 |
T |
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| Q |
212 |
tcagagattccataaataaggctggtgataaatatctaca |
251 |
Q |
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| T |
10138809 |
tcagagtttctattaataaggctggtgataaatatctaca |
10138770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 11304431 - 11304656
Alignment:
| Q |
19 |
atgcaggtatggagcaatggaagattttgcaatgtgaagcaccacatacaatgcaagggagctactacacgttattcaattgctacatttatgctgggac |
118 |
Q |
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| T |
11304431 |
atgcaggtatggagcaatggaaggttttgcaatgtgaagcaccgtgtactatgcaaagagcctactacacgttactcaattgctacatttatgttgggac |
11304530 |
T |
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| Q |
119 |
ccaggaagggaaatattgagaccccaaaggagttggtggaccttgatcacccacgtcttgatcaaccttttacttatgaagagtataggactctcagaga |
218 |
Q |
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| T |
11304531 |
cgaggaagggaaatgttgaggctccaaaggagttggtggaccatgatcacccacgtctttatcaaccttttacttatgaagaatataagacgctcagagt |
11304630 |
T |
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| Q |
219 |
ttccataaataaggctggtgataaat |
244 |
Q |
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| T |
11304631 |
ttccattaagaaggctcgtgataaat |
11304656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 10086334 - 10086144
Alignment:
| Q |
27 |
atggagcaatggaagattttgcaatgtgaagcaccacatacaatgcaagggagctactacacgttattcaattgctacatttatgctgggacccaggaag |
126 |
Q |
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||||||||||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
10086334 |
atggagcaatggaaggttttgcaatgtgaagcaccgtgtactatgcaaggaacctactacacgttattcaattgctacatttatgttgggaccgaggaag |
10086235 |
T |
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| Q |
127 |
ggaaatattgagaccccaaaggagttggtggaccttgatcacccacgtcttgatcaaccttttacttatgaagagtataggactctcagag |
217 |
Q |
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| T |
10086234 |
ggaaatgttgaggctccaaaggagttggtggaccatgatcacccgcttctttatcgaccttttacttatgaagagtataggacgctcagag |
10086144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 10151200 - 10151006
Alignment:
| Q |
12 |
gaaatgaatgcaggtatggagcaatggaagattttgcaatgtgaagcaccacatacaatgcaagggagctactacacgttattcaattgctacatttatg |
111 |
Q |
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||||||||| |||||||||||||||||||| |||| |||||| ||||||| |||||||||||| |||||| ||||| | ||||||||||||||| ||| |
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| T |
10151200 |
gaaatgaatacaggtatggagcaatggaaggttttacaatgtaaagcaccgtgtacaatgcaaggaagctaccacacgcttttcaattgctacattcatg |
10151101 |
T |
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| Q |
112 |
ctgggacccaggaagggaaatattgagaccccaaaggagttggtggaccttgatcacccacgtcttgatcaaccttttacttatgaagagtatag |
206 |
Q |
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| T |
10151100 |
ttgggaccgaggaagggaaatgttgaggttccaacagaggcggtggaccatgatcacccacgtctatataaaccttttgtttatgatgattatag |
10151006 |
T |
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