View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_low_16 (Length: 270)
Name: NF14879_low_16
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 14247795 - 14247542
Alignment:
| Q |
1 |
aggtggtaagtaaactcacccataaggtgttcatacctcccacaaacaacattgatgatagaatcgccacactcacaattgaacaaggctgctatttggc |
100 |
Q |
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| T |
14247795 |
aggtggtaagtaaactcacccataaggtgttcatacctcccacaaacaacattgatgatagaatcgccacactcacaattgaacaaggctgctatttggc |
14247696 |
T |
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| Q |
101 |
accggaatggtctttggcttatttggcacgcagcactttaagttatttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggatga |
200 |
Q |
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| T |
14247695 |
accggaatggtctttggcttatttggcacgcagcactttaagttatttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggatga |
14247596 |
T |
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| Q |
201 |
attggtggaggaagtgaaggtactgtcttggaggtgggtgttggatagaactaa |
254 |
Q |
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| T |
14247595 |
attggtggaggaagtgaaggtactgtcttggaggtgggtgttggatagaactaa |
14247542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 9850723 - 9850591
Alignment:
| Q |
98 |
ggcaccggaatggtctttggcttatttggcacgcagcactttaagttatttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtgga |
197 |
Q |
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| T |
9850723 |
ggcactggaatggtctttggcttatttggcacacggcactttgggttatttggaattctaggaatagcttaatctttatgaatgtggtaaagagggtgga |
9850624 |
T |
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| Q |
198 |
tgaattggtggaggaagtgaaggtactgtcttg |
230 |
Q |
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| T |
9850623 |
ggaattggcggaggaagtgaaggtactgtcttg |
9850591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 1330480 - 1330330
Alignment:
| Q |
99 |
gcaccggaatggtctttggcttatttggcacgcagcactttaagttatttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggat |
198 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330480 |
gcaccggaatggtcttttgcttatttggcacgcggcactttgggttatttggaatgctagaaatagcttaatctttaagaatgtggtaaggagggtggat |
1330381 |
T |
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| Q |
199 |
gaattggtggaggaagtgaaggtactgtcttggaggtgggtgttggatagaactaa |
254 |
Q |
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| T |
1330380 |
gaattggtggaggaagtgaag-----gtcttggagttgggtgttggatagaactaa |
1330330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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