View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14879_low_18 (Length: 257)
Name: NF14879_low_18
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 2996662 - 2996434
Alignment:
| Q |
22 |
tgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgattatccaatttaacaccttatttctc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2996662 |
tgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgattatccaatttaacaccctatttctc |
2996563 |
T |
|
| Q |
122 |
aacatgtataccaaaattgtgacatttatatatgggttatctaggagactagttctagtcaatatataagcgaacacatacaannnnnnncatgtagata |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
2996562 |
aacatgtataccaaaattgtgacatttatatatgggttatctaggagactagttctagtcaatatataagcgaacacagacaatttttttcatgtagata |
2996463 |
T |
|
| Q |
222 |
gatgagattaaagactttgtatctttctt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2996462 |
gatgagattaaagactttgtatctttctt |
2996434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 45120463 - 45120350
Alignment:
| Q |
25 |
tacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgattatccaatttaacaccttatttctcaac |
124 |
Q |
| |
|
||||||||| ||| | ||| ||||| |||| ||||| | |||||| |||||||||||| |||| ||||||||||||||| || || | || ||||| |
|
|
| T |
45120463 |
tacaatattccacatttacatgacctccatatctaatgagaagatgcggattgtatgagacgacataacgattatccaattggaccccctgcttgtcaac |
45120364 |
T |
|
| Q |
125 |
atgtataccaaaat |
138 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
45120363 |
atgtatcccaaaat |
45120350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University