View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_low_2 (Length: 542)
Name: NF14879_low_2
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 12163584 - 12164083
Alignment:
| Q |
18 |
aattttatgttacatcaaaactttcatcagcagatataactgtattatgagaagtgaacattctcgttctttatacac-tactaggaaacaaagatcatg |
116 |
Q |
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| T |
12163584 |
aatttcatgttacatcaaaacttttattagcagctataattatattatgagaagtgaacattctcgttctctatacatatactagcaaacaaagatcat- |
12163682 |
T |
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| Q |
117 |
tacataagcatgagaccagctatattcctttcatacaatcctcaaaacaaaacaaaattctgttcatacaatttgaatgtatgttgctgatctacttact |
216 |
Q |
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| T |
12163683 |
---------atgagaccagctatattcctttcatacaatcctcaaaacaaaacaaaattctcttcatacaatttgaatgtatgttgctgatccacttact |
12163773 |
T |
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| Q |
217 |
aataatagtaactcagaaataaagataagaatgaactnnnnnnntctcaacaaaacaatttaatgctcttattctatatttctgcctcaccttgcctata |
316 |
Q |
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| T |
12163774 |
aataatagtaactcagaaataaagataagaatgaactaaaaatatctgaacaaaacaatttaatgctattattctat--ttctgcctcaccttgcctata |
12163871 |
T |
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| Q |
317 |
aataccaaacatttggtcacttcattttcatcaatcaatacttttcctagatacatataagtttcatagagagtactttataaaaatgaattcaaaggct |
416 |
Q |
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| T |
12163872 |
aatacccaacatttggtcacttcattttcatcaatcaatacttttcctagatacatataagtttcatagagagtactttataaaaatgaattcaaaggct |
12163971 |
T |
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| Q |
417 |
tttcttttcctagccatgctgttggcttccatccttcttatatgtgcagagtctgcacccaaagacttggacaacaaagatggtaatactagttttgaac |
516 |
Q |
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| T |
12163972 |
ttacttttcctagccatgctgttggctaccatccttcttatatgtgcagagtctgcacccaaagacttggacaacaaagatggtaatactagttttgaac |
12164071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 374 - 528
Target Start/End: Original strand, 12149445 - 12149599
Alignment:
| Q |
374 |
taagtttcatagagagtactttataaaaatgaattcaaaggcttttcttttcctagccatgctgttggcttccatccttcttatatgtgcagagtctgca |
473 |
Q |
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| T |
12149445 |
taagtttcaaagtgagtacttcttgaaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcatttgtgcagagtctgca |
12149544 |
T |
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| Q |
474 |
cccaaagacttggacaacaaagatggtaatactagttttgaacatttagtataat |
528 |
Q |
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| T |
12149545 |
cccaaagacttggacaacaaagatggtaatactaattttttacatttagtataat |
12149599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 398 - 490
Target Start/End: Complemental strand, 12146340 - 12146248
Alignment:
| Q |
398 |
aaaaatgaattcaaaggcttttcttttcctagccatgctgttggcttccatccttcttatatgtgcagagtctgcacccaaagacttggacaa |
490 |
Q |
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| T |
12146340 |
aaaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgagactgcacccaaagacttggacaa |
12146248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 12149252 - 12149350
Alignment:
| Q |
145 |
tttcatacaatcctcaaaacaaaacaaaattctgttcatacaatttgaatgtatgttgctgatctacttactaataatagtaactcagaaataaagataa |
244 |
Q |
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| T |
12149252 |
tttcacacaatcctcaaaacaaaacaacactcttttcatacaatctga----atgttgccgatccacttactaataatagtaacttgggaaaaaagataa |
12149347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 12175238 - 12175301
Alignment:
| Q |
293 |
tatttctgcctcaccttgcctataaataccaaacatttggtcacttcattttcatcaatcaata |
356 |
Q |
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| T |
12175238 |
tatttcttcctcatcttgcctataaatacataactttcagtcacttcattttcatcgatcaata |
12175301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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