View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14879_low_24 (Length: 233)
Name: NF14879_low_24
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37827040 - 37826824
Alignment:
| Q |
1 |
tgattacttggtggtttcattatcttgtgataaaacaaggtcatcacatttggagtctttctctttgaaagataatacatggagagaaattgagggtact |
100 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37827040 |
tgattacttggttgtttcaatatcttgtgataaaacaaggtcatcacatttggagtttttctcgttgaaagataattcatggagagaaattgagggtact |
37826941 |
T |
|
| Q |
101 |
cacaccgcatataggaatggcttttataatgccaaagtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37826940 |
cacaccgcatataggaatggcttttataatgccaaagtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatc |
37826841 |
T |
|
| Q |
201 |
ttattgttgcctttaat |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37826840 |
ttattgttgcctttaat |
37826824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 49048579 - 49048516
Alignment:
| Q |
41 |
tcatcacatttggagtctttctctttgaaagataatacatggagagaaattgagggtactcaca |
104 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
49048579 |
tcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcaca |
49048516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 45372072 - 45372013
Alignment:
| Q |
44 |
tcacatttggagtctttctctttgaaagataatacatggagagaaattgagggtactcac |
103 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||||| ||||||||| |||||||||||||| |
|
|
| T |
45372072 |
tcacatttggagtttttctcattgagagataatacttggagagaacttgagggtactcac |
45372013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 48852741 - 48852893
Alignment:
| Q |
41 |
tcatcacatttggagtctttctctttgaaagataatacatggagagaaattgagggtactcacaccgcatataggaatggcttttataatgccaaagtag |
140 |
Q |
| |
|
||||||||||| |||| |||||| |||| || |||| |||||| ||||||||||||||||||| | | || | ||||| || || || ||| ||||| |
|
|
| T |
48852741 |
tcatcacatttagagtttttctcattgagagctaatgcatggaaagaaattgagggtactcacttcccttacatgaatgcctccgatgatcccagagtag |
48852840 |
T |
|
| Q |
141 |
ggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcacca |
193 |
Q |
| |
|
|||| || || |||||||| ||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
48852841 |
ggtcgctttttaatggggctattcattggttggcttttcgtcatgatttacca |
48852893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 7765701 - 7765761
Alignment:
| Q |
43 |
atcacatttggagtctttctctttgaaagataatacatggagagaaattgagggtactcac |
103 |
Q |
| |
|
|||||||||||||| |||||| || ||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
7765701 |
atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac |
7765761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 7786523 - 7786583
Alignment:
| Q |
43 |
atcacatttggagtctttctctttgaaagataatacatggagagaaattgagggtactcac |
103 |
Q |
| |
|
||||||||||||| |||||| || ||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
7786523 |
atcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac |
7786583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 179112 - 179168
Alignment:
| Q |
47 |
catttggagtctttctctttgaaagataatacatggagagaaattgagggtactcac |
103 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
179112 |
catttggagattttctcattgagagataatacatggaaagaaattgagggtattcac |
179168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 21979634 - 21979577
Alignment:
| Q |
45 |
cacatttggagtctttctctttgaaagataatacatggagagaaattgagggtactca |
102 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||| | ||||||||||| |||| |
|
|
| T |
21979634 |
cacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctca |
21979577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 21015884 - 21015944
Alignment:
| Q |
41 |
tcatcacatttggagtctttctctttgaaagataatacatggagagaaattgagggtactc |
101 |
Q |
| |
|
|||||||| || |||| |||||| |||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
21015884 |
tcatcacagttagagtttttctcgttgagagataataggtggaaagaaattgagggtactc |
21015944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 11024522 - 11024469
Alignment:
| Q |
41 |
tcatcacatttggagtctttctctttgaaagataatacatggagagaaattgag |
94 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
11024522 |
tcatcacatttgaagtttttctctttgagagctaatacatggaacgaaattgag |
11024469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 48883881 - 48883933
Alignment:
| Q |
43 |
atcacatttggagtctttctctttgaaagataatacatggagagaaattgagg |
95 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| |||| ||||||||||| |
|
|
| T |
48883881 |
atcacatttggagtgtttctcattgagagataatatgtggaaagaaattgagg |
48883933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University