View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_low_3 (Length: 505)
Name: NF14879_low_3
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 505
Target Start/End: Original strand, 25254922 - 25255397
Alignment:
| Q |
30 |
gggtgcaacaaagaacattttaacagaacgcacctcaccaattcccatgaatgcacgggcaactaatagaaaaggcaatccaagtttggcagctacggga |
129 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25254922 |
gggtgcaacaaagaacattttaacagaacacacctcaccaattcccatgaatgcacgggcaactaatagaaaaggcagtccaagtttggcagctacggga |
25255021 |
T |
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| Q |
130 |
gttaggattgtggcaacggaccaccaaatgacgccaaatgctaaaacttgcttccctcccactgtgtcagcccatattccaccagcaatctgcaacaagt |
229 |
Q |
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| T |
25255022 |
gttaggattgtggcaacggaccaccaaatgacgccaaatgctaaaacttgcttccctcccaccgtgtcagcccatattccaccagcaatctgcaacaagt |
25255121 |
T |
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| Q |
230 |
atctacggatgcatcagagctatggcttgtagttcaaaattaagagaagagaccaagaggtactaatcaaaatgaaaccacgtacctgagtgaggaggta |
329 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||||||||| |
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| T |
25255122 |
atctacagatgcatcagagctatggcttgtagttcaaaattaagagaagagacaaaaagttactaattaaaatgaaaccacgtacctgagtgaggaggta |
25255221 |
T |
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| Q |
330 |
tccccaaaagaaagaagactgtactaaacctacagtggtggggttccagttgtactctgctgacattggaagtatagcaatgctcatatttaccagtaaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25255222 |
tccccaaaagaaagaagactgtactaaacctacagtggtggggttccagttgtactctgctgacattggaagtatagcaatgctcatatttacctgtaaa |
25255321 |
T |
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| Q |
430 |
tgtgaaaagagcaaagcttctaagagccagagctagctgaagactccactacaatactaatctaaggttttcaaac |
505 |
Q |
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| T |
25255322 |
tgtgaaaagagcaaagtttctaagagccagagctagctgaagactccactacaatactaatctaaggttttcaaac |
25255397 |
T |
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