View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_low_5 (Length: 462)
Name: NF14879_low_5
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 113 - 449
Target Start/End: Original strand, 8105171 - 8105508
Alignment:
| Q |
113 |
ccaccatcatcttacttagacaatttatgttgtaaatcagaagccc-aaactttgattttaaaccctaattttcttcccctccaaaattcagaatataat |
211 |
Q |
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| T |
8105171 |
ccaccaccatcttacttagacaatttatgttgtaaatcagaagccccaaactttaattttaaaccctaattttcttcccctccaaaattcagaatataac |
8105270 |
T |
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| Q |
212 |
cttttaaattcggatccaattttcttcccctccagtttcaattattacagtccagcatccctaatttcgttttccttttcccaatccttactccccaatc |
311 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8105271 |
cttttaaattcggattcaattttcttcccctcaagtttcaattattacagtccagaatccctaatttcgttttccttttcccaatccttactccccaatc |
8105370 |
T |
|
| Q |
312 |
catgtgttcatcttaattctctcatcctctttatgttcttcatttaatatggaaacccaataaatcaatgaaaccaaaatcaaaacctctttctcaatct |
411 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
8105371 |
catgtgttcatcttaattctctcatcctcttcgtgttcttcatttaatatggaaacccagaaaatcaatgaaactcaaatcaaaacctctttctcaatct |
8105470 |
T |
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| Q |
412 |
tgttgtgtgtctgtgagtaataaaaatcaaaagcttag |
449 |
Q |
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| T |
8105471 |
tgttgtgtgtctctgagtaatcaaaatcaaaatcttag |
8105508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 8105126 - 8105181
Alignment:
| Q |
38 |
catctctccctcgtcaatcaagcaccacaccttcctcctcagtcaccgccaccatc |
93 |
Q |
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| T |
8105126 |
catctctccctcgtcaatcaatcaccacaccttcctcctcagtcaccaccaccatc |
8105181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 8105080 - 8105115
Alignment:
| Q |
11 |
cactatcatctctttgttcctcttccccatctctcc |
46 |
Q |
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| T |
8105080 |
cactatcatctctttgttcctcttccccatctctcc |
8105115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 21481535 - 21481592
Alignment:
| Q |
161 |
actttgattttaaaccctaattttcttcccctccaaaattcagaatataatcttttaa |
218 |
Q |
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| T |
21481535 |
actttaattctaaaccctaattttcttcccctccaaaattcagaatataaccttttaa |
21481592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 21481476 - 21481538
Alignment:
| Q |
67 |
ccttcctcctcagtcaccgccaccatcctcgtcgccaccaccacatccaccatcatcttactt |
129 |
Q |
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|
| T |
21481476 |
ccttcctcctcagtcaccaccaccatcctcgtcgccaccaccacacccacaaccatctcactt |
21481538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 21481397 - 21481433
Alignment:
| Q |
11 |
cactatcatctctttgttcctcttccccatctctccc |
47 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
21481397 |
cactgtcatctctttgttcctcttccccatctctccc |
21481433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 51028405 - 51028470
Alignment:
| Q |
158 |
caaactttgattttaaaccctaattttcttcccctccaaaattcagaatataatcttttaaattcg |
223 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||| ||| ||| | |||||||||| |
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| T |
51028405 |
caaactttgattctaaaccctaattttcttccccttcaaaattcataatttaaccatttaaattcg |
51028470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 36990259 - 36990333
Alignment:
| Q |
39 |
atctctccctcgtcaatcaagcaccaca----ccttcctcctcagtcaccgccaccatcctcgtcgccaccacca |
109 |
Q |
| |
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| T |
36990259 |
atctctccctcatcaatcaatcaccaccacacccttcctcctcaatcaccaccaccatcctcgtcgccaccacca |
36990333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 37015699 - 37015773
Alignment:
| Q |
39 |
atctctccctcgtcaatcaagcaccaca----ccttcctcctcagtcaccgccaccatcctcgtcgccaccacca |
109 |
Q |
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| T |
37015699 |
atctctccctcatcaatcaatcaccaccacacccttcctcctcaatcaccaccaccatcctcgtcgccaccacca |
37015773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 35741580 - 35741505
Alignment:
| Q |
38 |
catctctccctcgtcaatcaagcaccaca----ccttcctcctcagtcaccgccaccatcctcgtcgccaccacca |
109 |
Q |
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|||||||||||| |||||||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
35741580 |
catctctccctcatcaatcaatcaccaccacacccttcctcctcaatcaccaccaccatcctcgtcaccaccacca |
35741505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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