View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14879_low_6 (Length: 404)
Name: NF14879_low_6
Description: NF14879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14879_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 32259389 - 32259001
Alignment:
| Q |
1 |
caattttgcaaattgtccggccagctgaccgacagcacctgatgccgccgagatgaagacgctttctcctttctttagagaaccaacttcaaagattccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32259389 |
caattttgcaaattgtccggccagctgaccgacagcacctgatgccgccgagatgaagacactttctcctttctttagagaaccaacttcaaagattccg |
32259290 |
T |
|
| Q |
101 |
gcatatgcagtaataccaggcatgcctattggattagaaagaataaaatacatcagaagctaccaaaaactgactctcataatagatttatcatttcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32259289 |
gcatatgcagtaataccaggcatgcctattggattagaaagaataaaatacatcagaaactaccaaaaactgactctcataatagatttatcatttcttt |
32259190 |
T |
|
| Q |
201 |
tcagcattacattcagaaaaagcataatnnnnnnntttgagaagaactcaattaccaagaattccagtgtaataggaaagaggcacatcagtgtgatgga |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32259189 |
tcagcattacattcagaaaaagcataataaaaaac-ttgagaagaactcaattactaagaattccagtgtaataggaaagaggcacatcagtgtgatgga |
32259091 |
T |
|
| Q |
301 |
ttttgtagagtttgtctggattttgaattagactatattcttcccaactagttatcccccataccaagtcaccttcactgaagttaggat |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32259090 |
ttttgtagagtttgtctggattttgaattagactatattcttcccaactagttatcccccataccaagtcaccttcactgaagttaggat |
32259001 |
T |
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