View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_high_4 (Length: 381)
Name: NF1487_high_4
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 41783508 - 41783843
Alignment:
| Q |
22 |
ataattatccctttgttttcatgatccaattaatttaatttaatcttttatggtagtaaagtagtagattgttctgctataatagcaaatctatctatag |
121 |
Q |
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| T |
41783508 |
ataattatcactttgttttcatgatccaattaaattaattg-----tttattatagtatagtagtagattgttctgctataattgcaaaactatctatag |
41783602 |
T |
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| Q |
122 |
ttactttgtttgttccttgtatcatggctgatgataataatatgaaccgtgatgttctctcacttagcaacaacaatcacaccatggttccaacagacga |
221 |
Q |
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| T |
41783603 |
ttactttgtttgttccttttatcatggctgatgataataatatgaaccatgatgttctctcacttagcaacaacaatcacaccatggttccaacagacga |
41783702 |
T |
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| Q |
222 |
agatttcatcaccgaattaactcatcaaatgtctcaattcatgcttcaagaagaagatattgacgactcattcgatttctcatctattgcctcccagagt |
321 |
Q |
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| T |
41783703 |
agatttcatcaccgagttaactcatcaaatgtctcaattcatgcttcaagaagaagatattgacgactcattcgatttctcatctattgcctcccagagt |
41783802 |
T |
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| Q |
322 |
cacaattccgaactggtaccatatgttttccttaccatcta |
362 |
Q |
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| T |
41783803 |
cacaattccgaactggtaccatatgttttccttaccatcta |
41783843 |
T |
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