View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_high_6 (Length: 345)
Name: NF1487_high_6
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 331
Target Start/End: Original strand, 5546013 - 5546338
Alignment:
| Q |
6 |
agagagaagaatgaaagtaatagaatagtgaaaatgaatgatttttgtgaatatataccagcatgaggtaagaaggggagtggcggaccctgcaaatggg |
105 |
Q |
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| T |
5546013 |
agagagaagaatgtaagtaatagaatagtgaaaatgaatgatttttgtgaatatataccagcatgaggtaagaaggtgagtggcggaccctgcaaatggg |
5546112 |
T |
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| Q |
106 |
gtcaccaagcatgtcggtgaagagagaaagttggttactaggtccaacttcacatgtcctttcaactgcttctactctttctttgtctttattaacttcg |
205 |
Q |
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| T |
5546113 |
gtcaccaagcatgtcggtgaagagagaaagttggttactaggtccaacttcacatgtcctttcaactgcttctactctttctttgtctttattaacttcg |
5546212 |
T |
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| Q |
206 |
aattctcgaacaatcacactaacggatacatcaattctcataattgcaagtatatatgattctatagaagaaaaaagaatgggagaataatggtgtatgt |
305 |
Q |
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| T |
5546213 |
aattctcgaacaatcacactaacggatacatcaactctcataattgcaagtatatatgattctatagaagaaaaaagaatgggagaataatggtgtatgt |
5546312 |
T |
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| Q |
306 |
ttgtggagaatgtaatatgaagttat |
331 |
Q |
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| T |
5546313 |
ttgtggagaatgtaatatgaagttat |
5546338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 39918108 - 39917998
Alignment:
| Q |
89 |
cggaccctgcaaatggggtcaccaagcatgtcggtgaagagagaaagttggttactaggtccaacttcacatgtcctttcaactgcttctactctttctt |
188 |
Q |
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| T |
39918108 |
cggactctgcaaatagggtcaccgtgcaagtcggtgaagagggaaagcttaccactgggtccaacttcacatattttttcaactgcttcaacactttctc |
39918009 |
T |
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| Q |
189 |
tgtctttatta |
199 |
Q |
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| T |
39918008 |
tatctttatta |
39917998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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