View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_high_8 (Length: 291)
Name: NF1487_high_8
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 39712992 - 39712718
Alignment:
| Q |
1 |
gtttccaaagcaaaatcaccagttgtattggaactatcaccataccaatagaagtaaggacaagtttgattctcatctttacaaggcttaggtggatctg |
100 |
Q |
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| T |
39712992 |
gtttccaaagcaaaatcaccagttgtattggaactatcaccataccaatagaagtaaggacaagtttgattctcatctttacaaggcttaggtggatctg |
39712893 |
T |
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| Q |
101 |
gtgatgaaactaatttacacctaggatcatgacatgttatattttcaaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagc |
200 |
Q |
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| T |
39712892 |
gtgatgaaactaatttacacctaggatcatgacatgttatattttcaaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagc |
39712793 |
T |
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| Q |
201 |
aatgcaaggaacacattgaatccaattaagatcactaccagtatcaagtatcaaagaataatgcttaggtggtgt |
275 |
Q |
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| T |
39712792 |
aatgcaaggaacacattgaatccaattaagatcactaccagtatcaagtatcaaagaataatgcttaggtggtgt |
39712718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 15284145 - 15284407
Alignment:
| Q |
13 |
aaatcaccagttgtattggaactatcaccataccaatagaagtaaggacaagtttgattctcatct---ttacaaggcttaggtggatctggtgatgaaa |
109 |
Q |
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| T |
15284145 |
aaatcgccagttgtgttagaactatcgccataccaataaaaatacggacaagtttgattctcctcagccttacagggctgaggaggatcaggcgatgaca |
15284244 |
T |
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| Q |
110 |
ctaatttacacctaggatcatgacatgttatattttcaaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagcaatgcaagg |
209 |
Q |
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| T |
15284245 |
cgagttgacaccgcgaatcgtgacaacttatgttcttaaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaagg |
15284344 |
T |
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| Q |
210 |
aacacattgaatccaattaagatcactaccagtatcaagtatcaaagaataatgcttaggtgg |
272 |
Q |
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| T |
15284345 |
aacacattgaatccagttaagatcactaccggtgtcaagtatcagagaaaaatgttttggtgg |
15284407 |
T |
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