View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_low_1 (Length: 609)
Name: NF1487_low_1
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 134 - 591
Target Start/End: Complemental strand, 39866553 - 39866096
Alignment:
| Q |
134 |
ccctacataacgagtaaactgaattgactctatttgataagaacatagcaatgctgatcatatagtctaggctttggacatacaccaatagaagtatata |
233 |
Q |
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| T |
39866553 |
ccctacataacgactaaactgaattgactctatttgataagaacatagcaatgctgatcatatagtctaggctttggacatacaccaatagaagtatata |
39866454 |
T |
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| Q |
234 |
aataagacttgattaagaataatatttagcagattacatcatagctaacaaataatagaaacttaatagcacatcattggatagactattaatgaatact |
333 |
Q |
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| T |
39866453 |
aataagacttgattaagaataatatttagcagattacatcatagctaacaaataatagaaacttaatagcacatcattggatagactattaatgaatact |
39866354 |
T |
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| Q |
334 |
tatcttacttaagactataatagtactagttattgtctaatactagtactttattcttccaataaaggtagctgctgctgggacgtgtattttgcatgtg |
433 |
Q |
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| T |
39866353 |
tatcttacttaagactataatagtactagttattgtctaatactagtactttattcttccaataaaggtagctgctgctgggacgtgtattttgcatgtg |
39866254 |
T |
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| Q |
434 |
ttcctaagatcaaattaagctaaattcggtatggcctaagtagtggaacaagtgaaccacttaggtgtagggacataacttcattggtggaccccaccaa |
533 |
Q |
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| T |
39866253 |
ttcctaagatcaaattaagctaaattcggtatggcctaagtagtggaacgagtgaaccacttaggtgtagggacattacttcattggtggaccccacaag |
39866154 |
T |
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| Q |
534 |
ccttcctccaatgaatactgcagggacaggtgcattacaacccaactttgttatagct |
591 |
Q |
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| T |
39866153 |
ccttcctccaatgaatactgcagggacaggtgcattacaacccaactttgttatagct |
39866096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 441 - 591
Target Start/End: Complemental strand, 39861792 - 39861642
Alignment:
| Q |
441 |
gatcaaattaagctaaattcggtatggcctaagtagtggaacaagtgaaccacttaggtgtagggacataacttcattggtggaccccaccaaccttcct |
540 |
Q |
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| T |
39861792 |
gatcaaattaagttaaattcggtatggcctaagtagtggaacaagtgaaccacttaggtgtagggacattacttcattggtggaccccacaagccttcct |
39861693 |
T |
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| Q |
541 |
ccaatgaatactgcagggacaggtgcattacaacccaactttgttatagct |
591 |
Q |
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| T |
39861692 |
ccaatgaatactgcagggacaggtgcattacaacccaactttgttatagct |
39861642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39866688 - 39866596
Alignment:
| Q |
1 |
aacctaaagtaaagaatgttgtagttatttcaagatcactttgatgattgacaaaataattgatatggtaaaagatttgtagtttttgagacc |
93 |
Q |
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| T |
39866688 |
aacctaaagtaaagaatgttgtagttatttcaagatcactttaatgattgacaaaataattgatatggtaaaagatttatagtttttgagacc |
39866596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 39861962 - 39861888
Alignment:
| Q |
274 |
atagctaacaaataatagaaacttaatagcacatcattggatagactatta----atgaatacttatcttactta |
344 |
Q |
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| T |
39861962 |
atagcaaacaaataatagaaacttaatcacacatcattggatagactattatattatgaatacttatcttactta |
39861888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 575
Target Start/End: Original strand, 44001364 - 44001455
Alignment:
| Q |
484 |
agtgaaccacttaggtgtagggacataacttcattggtggaccccaccaaccttcctccaatgaatactgcagggacaggtgcattacaacc |
575 |
Q |
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| T |
44001364 |
agtgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcaggaacaggtgcagtacaacc |
44001455 |
T |
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