View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_low_11 (Length: 251)
Name: NF1487_low_11
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 30709049 - 30708823
Alignment:
| Q |
9 |
ttatactgaactgtgttcgactgtgcatattataattttgtgagccgctgacacaaatgtgaggaagccaacaagtgagtaaagaaccgaagattattca |
108 |
Q |
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| T |
30709049 |
ttatactgaactgtgttcgactgtgcatattataattttgtgagccgctgacacaaatgtgaggaagccaacaagtgagtaaagaaccgaagattactca |
30708950 |
T |
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| Q |
109 |
aaagtgatgattactaacttggattctgcataccatctatgccaactgacatatcctcttcttaaagaatctggaaatgcaagaagcattgtattcaatt |
208 |
Q |
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| T |
30708949 |
aaagtgatgattactaacttggattctgcataccatctatgccaactgacatatcctcttcttaaagaatctggaaatgcaagaagcattgtattcaatt |
30708850 |
T |
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| Q |
209 |
cctccgttgcatctctaacaagcatag |
235 |
Q |
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| T |
30708849 |
cctccgttgcatctctaacaagcatag |
30708823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 61 - 224
Target Start/End: Complemental strand, 30699522 - 30699362
Alignment:
| Q |
61 |
acaaatgtgaggaagccaacaagtgagtaaagaaccgaagattattcaaaagtgatgattactaacttggattctgcataccatctatgccaactgacat |
160 |
Q |
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| T |
30699522 |
acaaatgtgaggaaaccaacaattgagtatacaacagaagattattcaaaattgatgactattaacttggattctgcataccatctatgccaactgacat |
30699423 |
T |
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| Q |
161 |
atcctcttcttaaagaatctggaaatgcaagaagcattgtattcaattcctccgttgcatctct |
224 |
Q |
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| T |
30699422 |
atcctcttcttaaagaatctggaaatg---gaagcattgtattcaattcctctgttgcatctct |
30699362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 30706357 - 30706195
Alignment:
| Q |
61 |
acaaatgtgaggaagccaacaagtgagtaaagaaccgaagattattcaaaagtgatgattactaacttggattctgcataccatctatgccaactgacat |
160 |
Q |
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|||||||||||||||||||||| |||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |
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| T |
30706357 |
acaaatgtgaggaagccaacaattgagtatacagccgaagattattcaaaagtgatgactactaacttggattctgcataccatctatgtcaactagcat |
30706258 |
T |
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| Q |
161 |
atcctcttcttaaagaatctggaaatgcaagaagcattgtattcaattcctccgttgcatctctaa |
226 |
Q |
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| T |
30706257 |
atcctcttcttaaagaatctggaaatg---gaagcattgtgttcatttcctctgttgcatctctaa |
30706195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 61 - 231
Target Start/End: Complemental strand, 30719340 - 30719173
Alignment:
| Q |
61 |
acaaatgtgaggaagccaacaagtgagtaaagaaccgaagattattcaaaagtgatgattactaacttggattctgcataccatctatgccaactgacat |
160 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30719340 |
acaaatgtgaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacat |
30719241 |
T |
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| Q |
161 |
atcctcttcttaaagaatctggaaatgcaagaagcattgtattcaattcctccgttgcatctctaacaagc |
231 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||| |||||| |
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| T |
30719240 |
atcctcttcttaaagaatctggaaatg---gaagcattgttttcatttcctctgttgggtctctgacaagc |
30719173 |
T |
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