View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_low_12 (Length: 250)
Name: NF1487_low_12
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 35182218 - 35182371
Alignment:
| Q |
88 |
taaataaaatggtacaaagtataaaaaata-ctcaaaaccctcaagggatacttaaagcacataaactaaacacgaagggnnnnnnnctcaaaagcacta |
186 |
Q |
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| T |
35182218 |
taaataaaatggtacaaaatataaaaaataactcaaaaccctcaagggatacttaaagcacataaactaaacacgaagggaaaaaactacaaaagcacta |
35182317 |
T |
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| Q |
187 |
agactaacttctcaaaattcaatctcttagataagccaaccactcctagaataa |
240 |
Q |
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| T |
35182318 |
agactaacttctcaaaattcaatctcttagataagccaaccactcctagaataa |
35182371 |
T |
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Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35181421 - 35181515
Alignment:
| Q |
1 |
acagtatcgaactcagatcacaaggattgaagaacttttatcttttgaattgtaaaaatatactcgaggtcacaaagagtatactattaaataaa |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181421 |
acagtatcgaactcagatcacaaggattgaagaacttttatcttttgaattgtaaaaatatactcgaggtcacaaagagtatactattaaataaa |
35181515 |
T |
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