View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1487_low_15 (Length: 227)

Name: NF1487_low_15
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1487_low_15
NF1487_low_15
[»] chr8 (4 HSPs)
chr8 (1-142)||(32901636-32901777)
chr8 (134-227)||(32900307-32900389)
chr8 (4-53)||(33444633-33444682)
chr8 (16-56)||(12650156-12650196)
[»] chr1 (9 HSPs)
chr1 (4-53)||(31806763-31806812)
chr1 (4-59)||(11014442-11014497)
chr1 (4-53)||(37336459-37336508)
chr1 (4-64)||(29091682-29091742)
chr1 (4-59)||(20504990-20505045)
chr1 (10-61)||(52699465-52699516)
chr1 (4-53)||(1007763-1007812)
chr1 (4-53)||(13653867-13653916)
chr1 (16-53)||(24116344-24116381)
[»] chr2 (5 HSPs)
chr2 (10-61)||(5002836-5002887)
chr2 (16-63)||(25455051-25455098)
chr2 (10-61)||(45694209-45694260)
chr2 (16-53)||(39819723-39819760)
chr2 (4-60)||(8868664-8868719)
[»] chr3 (2 HSPs)
chr3 (5-53)||(31435930-31435978)
chr3 (16-54)||(40584627-40584665)
[»] chr6 (2 HSPs)
chr6 (4-63)||(3869520-3869579)
chr6 (10-54)||(16968946-16968990)
[»] chr5 (3 HSPs)
chr5 (4-59)||(15200547-15200602)
chr5 (4-49)||(6930659-6930704)
chr5 (16-53)||(43346902-43346939)
[»] scaffold0006 (1 HSPs)
scaffold0006 (4-53)||(143628-143677)
[»] chr7 (4 HSPs)
chr7 (34-63)||(22156061-22156090)
chr7 (34-63)||(22211976-22212005)
chr7 (4-53)||(41684029-41684078)
chr7 (5-53)||(41632371-41632419)
[»] chr4 (2 HSPs)
chr4 (10-59)||(7258987-7259036)
chr4 (16-53)||(26165395-26165432)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 32901777 - 32901636
Alignment:
Q  1 atttatttatatcaatttattctcagtaatctacaaatataacttgaaacaaatgcacccttaagactaaatgacgaggtgtttgtttcggcataacatt 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  32901777 atttatttatatcaatttattctcagaaatctacaaatataacttgaaacaaatgcactcttaaaactaaatgacgtggtgtttgtttcggcataacatt 32901678  T
Q  101 ttttatctgtatagactcccaagtttttgtgcattgaaagtt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32901677 ttttatctgtatagactcccaagtttttgtgcattgaaagtt 32901636  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 32900389 - 32900307
Alignment:
Q  134 ttgaaagtttatatatagcttaatagcttgaacaatatttgtaagttgcatttcctttcatatgtaacttttttcttagaggtaaacttttcat 227  Q
    |||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32900389 ttgaaagtttatatatagcttaatagc-----------ttgtaagttgcatttcctttcatatgtaacttttttcttagaggtaaacttttcat 32900307  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 33444682 - 33444633
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||| ||||| ||||||||||| |||| |||||||||||||||||||||    
T  33444682 tatttttatcattttattctcaggaatcaacaaatataacttgaaacaaa 33444633  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 12650156 - 12650196
Alignment:
Q  16 tttattctcagtaatctacaaatataacttgaaacaaatgc 56  Q
    |||||| ||| ||| ||||||||||||||||||||||||||    
T  12650156 tttattttcaataacctacaaatataacttgaaacaaatgc 12650196  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 31806812 - 31806763
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  31806812 tatttctatcattttattctcaggaatctacaaatataacttgaaacaaa 31806763  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 11014497 - 11014442
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaatgcacc 59  Q
    ||||| ||||| ||||||| ||| |||||||| |||||||||||||||||||||||    
T  11014497 tatttctatcattttattcccaggaatctacatatataacttgaaacaaatgcacc 11014442  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 37336508 - 37336459
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||||||||| |||||| |||  ||||||||||||||||||||||||||    
T  37336508 tatttatatcattttattatcatgaatctacaaatataacttgaaacaaa 37336459  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 29091682 - 29091742
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaatgcacccttaa 64  Q
    ||||| ||||| |||||| |||| |||| |||||||||||||||||||||  |||||||||    
T  29091682 tatttttatcattttattatcaggaatcaacaaatataacttgaaacaaacacacccttaa 29091742  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 20505045 - 20504990
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaatgcacc 59  Q
    ||||| ||||| ||||||||||| ||||||||||||||| || ||||||| |||||    
T  20505045 tatttctatcattttattctcagaaatctacaaatataatttaaaacaaacgcacc 20504990  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 52699516 - 52699465
Alignment:
Q  10 tatcaatttattctcagtaatctacaaatataacttgaaacaaatgcaccct 61  Q
    ||||| ||||||| ||| ||||||| |||||||||||||||||| |||||||    
T  52699516 tatcattttattcccaggaatctacgaatataacttgaaacaaacgcaccct 52699465  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 1007763 - 1007812
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    |||| |||||| ||||||||| | |||| |||||||||||||||||||||    
T  1007763 tattcatatcattttattctcgggaatcaacaaatataacttgaaacaaa 1007812  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 13653867 - 13653916
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||| ||||| ||||||||||| |||| |||||| ||||||||||||||    
T  13653867 tatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaa 13653916  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 24116381 - 24116344
Alignment:
Q  16 tttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  24116381 tttattctcaggaatctacaaatataacctgaaacaaa 24116344  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 5002887 - 5002836
Alignment:
Q  10 tatcaatttattctcagtaatctacaaatataacttgaaacaaatgcaccct 61  Q
    ||||| |||||||| || |||||||||||||||||||||||||| |||||||    
T  5002887 tatcattttattcttagaaatctacaaatataacttgaaacaaacgcaccct 5002836  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 25455051 - 25455098
Alignment:
Q  16 tttattctcagtaatctacaaatataacttgaaacaaatgcaccctta 63  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  25455051 tttattctcaggaatctacaaatataacttgaaacaaacacaccctta 25455098  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 45694209 - 45694260
Alignment:
Q  10 tatcaatttattctcagtaatctacaaatataacttgaaacaaatgcaccct 61  Q
    ||||| ||||||| ||| ||||||| |||||||||||||||||| |||||||    
T  45694209 tatcattttattcccagaaatctacgaatataacttgaaacaaacgcaccct 45694260  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 39819723 - 39819760
Alignment:
Q  16 tttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  39819723 tttattttcaggaatctacaaatataacttgaaacaaa 39819760  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 8868719 - 8868664
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaatgcaccc 60  Q
    ||||| |||||||||||||  || |||||||||| ||||||||||||||| ||||||    
T  8868719 tatttctatcaatttattcctaggaatctacaaa-ataacttgaaacaaacgcaccc 8868664  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 31435978 - 31435930
Alignment:
Q  5 atttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    |||| ||||| ||||||||||| |||| |||||||||||||||||||||    
T  31435978 atttctatcattttattctcaggaatcaacaaatataacttgaaacaaa 31435930  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 40584627 - 40584665
Alignment:
Q  16 tttattctcagtaatctacaaatataacttgaaacaaat 54  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  40584627 tttattctcaggaatctacaaatataacttaaaacaaat 40584665  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 3869520 - 3869579
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaatgcaccctta 63  Q
    ||||| ||||| ||||||| ||| |||||||||| |||||||||||||||  ||||||||    
T  3869520 tatttctatcattttattcccagaaatctacaaaaataacttgaaacaaacacaccctta 3869579  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 16968946 - 16968990
Alignment:
Q  10 tatcaatttattctcagtaatctacaaatataacttgaaacaaat 54  Q
    ||||| ||||||||||| |||| |||| |||||||||||||||||    
T  16968946 tatcattttattctcaggaatcaacaattataacttgaaacaaat 16968990  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 15200602 - 15200547
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaatgcacc 59  Q
    ||||||||||| |||||| |||  |||||| ||||||||||||||||||| |||||    
T  15200602 tatttatatcattttattttcaaaaatctataaatataacttgaaacaaacgcacc 15200547  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6930659 - 6930704
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaa 49  Q
    ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  6930659 tatttctatcattttattctcaggaatcaacaaatataacttgaaa 6930704  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 43346939 - 43346902
Alignment:
Q  16 tttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  43346939 tttattttcaggaatctacaaatataacttgaaacaaa 43346902  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 143628 - 143677
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||| ||||| ||||||||||| |||| |||||| ||||||||||||||    
T  143628 tatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaa 143677  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 22156090 - 22156061
Alignment:
Q  34 caaatataacttgaaacaaatgcaccctta 63  Q
    ||||||||||||||||||||||||||||||    
T  22156090 caaatataacttgaaacaaatgcaccctta 22156061  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 22212005 - 22211976
Alignment:
Q  34 caaatataacttgaaacaaatgcaccctta 63  Q
    ||||||||||||||||||||||||||||||    
T  22212005 caaatataacttgaaacaaatgcaccctta 22211976  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 41684078 - 41684029
Alignment:
Q  4 tatttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||| |||||  |||||||||| |||| |||||||||||||||||||||    
T  41684078 tatttctatcatattattctcaggaatcaacaaatataacttgaaacaaa 41684029  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 41632419 - 41632371
Alignment:
Q  5 atttatatcaatttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    |||| ||||| ||||||||||| |||| |||| ||||||||||||||||    
T  41632419 atttctatcattttattctcaggaatcaacaattataacttgaaacaaa 41632371  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 7258987 - 7259036
Alignment:
Q  10 tatcaatttattctcagtaatctacaaatataacttgaaacaaatgcacc 59  Q
    ||||| |||||||| || ||||||| |||||||||||||||||| |||||    
T  7258987 tatcattttattctaaggaatctaccaatataacttgaaacaaacgcacc 7259036  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 26165395 - 26165432
Alignment:
Q  16 tttattctcagtaatctacaaatataacttgaaacaaa 53  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  26165395 tttattctcaggaatctacaaatataacatgaaacaaa 26165432  T

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