View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1487_low_16 (Length: 225)

Name: NF1487_low_16
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1487_low_16
NF1487_low_16
[»] chr5 (4 HSPs)
chr5 (51-209)||(36082195-36082353)
chr5 (54-209)||(36092954-36093109)
chr5 (54-209)||(36086961-36087116)
chr5 (61-207)||(36090505-36090651)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 36082353 - 36082195
Alignment:
Q  51 taatgatcaggaaacttcattagagcaaacaaattataaaaaataagctgaaacttttatcgatcatcataaagtgaagaagattttggctaattggaga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36082353 taatgatcaggaaacttcattagagcaaacaaattataaaaaataagctgaaacttttatcgatcatcataaagtgaagaagattttggttaattggaga 36082254  T
Q  151 caaaggaagaatatacaaagtgaaagagaagtcgctccactcaaacttgagcaaattca 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36082253 caaaggaagaatatacaaagtgaaagagaagtcgctcgactcaaacttgagcaaattca 36082195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 36093109 - 36092954
Alignment:
Q  54 tgatcaggaaacttcattagagcaaacaaattataaaaaataagctgaaacttttatcgatcatcataaagtgaagaagattttggctaattggagacaa 153  Q
    |||||| |||||||| ||||||||||||||||||||||||| || |||  || |||||||||||||  ||||||||||||||||||||||||||||||||    
T  36093109 tgatcatgaaacttccttagagcaaacaaattataaaaaatcagttgactctcttatcgatcatcaagaagtgaagaagattttggctaattggagacaa 36093010  T
Q  154 aggaagaatatacaaagtgaaagagaagtcgctccactcaaacttgagcaaattca 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36093009 aggaagaatatacaaagtgaaagagaagtcgctcgactcaaacttgagcaaattca 36092954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 36087116 - 36086961
Alignment:
Q  54 tgatcaggaaacttcattagagcaaacaaattataaaaaataagctgaaacttttatcgatcatcataaagtgaagaagattttggctaattggagacaa 153  Q
    |||||| |||||||| |||||||||||||||||||||||   || ||| ||| |||||||||||||  ||||||||||||||||||||||||||||||||    
T  36087116 tgatcatgaaacttccttagagcaaacaaattataaaaagccagttgatactcttatcgatcatcaagaagtgaagaagattttggctaattggagacaa 36087017  T
Q  154 aggaagaatatacaaagtgaaagagaagtcgctccactcaaacttgagcaaattca 209  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  36087016 aggaagaatatacaaagtgaaagagaaatcgctcgactcaaacttgagcaaattca 36086961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 36090651 - 36090505
Alignment:
Q  61 gaaacttcattagagcaaacaaattataaaaaataagctgaaacttttatcgatcatcataaagtgaagaagattttggctaattggagacaaaggaaga 160  Q
    |||||||||| ||||||||| ||||||||||||| |||||| |||||||| ||||||||| |||  |||||||||||||||||| |||||| || |||||    
T  36090651 gaaacttcatcagagcaaacgaattataaaaaatcagctgacacttttattgatcatcatgaagctaagaagattttggctaatcggagacgaatgaaga 36090552  T
Q  161 atatacaaagtgaaagagaagtcgctccactcaaacttgagcaaatt 207  Q
    ||| ||||| ||||||||||| ||||| |||||||||||||||||||    
T  36090551 atacacaaattgaaagagaagccgctcgactcaaacttgagcaaatt 36090505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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