View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_low_3 (Length: 493)
Name: NF1487_low_3
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 48925509 - 48925056
Alignment:
| Q |
1 |
gggattggtccgaatgctcgaacgtatgatataatacttgttcacttgataaagggtggaagaaccaaagaagcttactcggttttccagaggatgagta |
100 |
Q |
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| T |
48925509 |
gggattggtccgaatgctcgaacgtatgatataatacttgttcacttgataaagggtggaagaaccaaagaagcttactcggttttccagaggatgagta |
48925410 |
T |
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| Q |
101 |
gtgagacggggtgtgagccgagtgtaagcacatatgcgatcatggtgaggatgttttgtaatgaaaaccaattggatatggcaatggtagtttggaatga |
200 |
Q |
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| T |
48925409 |
gtgagacggggtgtgagccgagtgtaagcacatatgcgatcatggtgagaatgttttgtaatgaaaaccaattggatatggcaatggtagtttggaatga |
48925310 |
T |
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| Q |
201 |
gatgaaagacaagggaatccttccgggaattcacatgttctcgacattaataatttccttgtgtcatgaaaataagttggatgatgcatgcagatacttt |
300 |
Q |
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| T |
48925309 |
gatgaaagacaagggaatccttccgggaattcacatgttctcgacattaataatttccttgtgtcatgaaaataagttggatgatgcatgcagatacttt |
48925210 |
T |
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| Q |
301 |
caacaaatgctggatgttggcattcggcctactgctaatatgttcagtgccttcaagagagctctaatggctgcgggaatggaaaatactgtgatacatt |
400 |
Q |
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| T |
48925209 |
caacaaatgctggatgttggcattcggcctactgctaatatgttcagtgccttcaagagagctctaatggctgcgggaatggaaaatactgtgatacatt |
48925110 |
T |
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| Q |
401 |
ttgcaaagaaagttgataaactgaggaatactccattaattgcttgacttacac |
454 |
Q |
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| T |
48925109 |
ttgcaaagaaagttgataaactgaggaatactccattaattgcttgacttacac |
48925056 |
T |
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