View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1487_low_8 (Length: 318)
Name: NF1487_low_8
Description: NF1487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1487_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 4389980 - 4390291
Alignment:
| Q |
7 |
aatgaaactaatagttggtgctagatgaagatggaagacgtgatagtaccgtctatttcatgatatcccatagtttgatttatattttcttctaaactaa |
106 |
Q |
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| T |
4389980 |
aatgaaactaatagttggtgctagatgaagatggaagacgtgatagtaccgtctatttcatgatatcccatagtttgatttatattttcttctaaactaa |
4390079 |
T |
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| Q |
107 |
caatacatgatttgaagctaaagttctcatttacttctcataaaaagaaagttcttatttacttgtggattaatccattatagttaggcgtgtgatcaaa |
206 |
Q |
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| T |
4390080 |
caatacatgatttgaagctaaagttctcatttacttctcataaaaagaaagttcttatttacttgtggattaatccattatagttaggcgtgtgatcaaa |
4390179 |
T |
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| Q |
207 |
ataatcatcattctaaatttccaagcgtctagaatcgcctataatattgaaccgatcaataatccaaaagtattctatattatattatttttcaacaaaa |
306 |
Q |
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| T |
4390180 |
ataatcatcattctaaatttccaagcgtctagaatcgcctataatattgaaccgatcaataatccaaaagtattctatattatattatttttcaacaaaa |
4390279 |
T |
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| Q |
307 |
gaaactaaaagt |
318 |
Q |
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| T |
4390280 |
gaaactaaaagt |
4390291 |
T |
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