View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14880_high_3 (Length: 449)

Name: NF14880_high_3
Description: NF14880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14880_high_3
NF14880_high_3
[»] chr8 (1 HSPs)
chr8 (3-157)||(31471488-31471642)
[»] chr7 (2 HSPs)
chr7 (124-173)||(48551485-48551534)
chr7 (124-168)||(32141590-32141634)
[»] chr5 (1 HSPs)
chr5 (124-161)||(10950919-10950956)
[»] chr4 (1 HSPs)
chr4 (126-171)||(42725942-42725987)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 31471488 - 31471642
Alignment:
Q  3 tcgagtgagatgaatgcgaaatatatatcatgaaacgataaataagcaaataatcaatataatgaagaaaatcaatcatgaagatggatatatttacttc 102  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  31471488 tcgagttaaatgaatgcgaaatatatattatgaaacgataaataagcaaataatcaatatattgaaggaaatcaatcatgaagatggatatatttacttc 31471587  T
Q  103 aagagtaagcaagcctatattcttactccaaatcttaacccttaatttcctttta 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31471588 aagagtaagcaagcctatattcttactccaaatcttaacccttaatttcctttta 31471642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 48551485 - 48551534
Alignment:
Q  124 cttactccaaatcttaacccttaatttccttttaatctaatggttctaat 173  Q
    ||||||| |||||||||||||||||||  ||||||||||| |||||||||    
T  48551485 cttactctaaatcttaacccttaatttaattttaatctaacggttctaat 48551534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 32141634 - 32141590
Alignment:
Q  124 cttactccaaatcttaacccttaatttccttttaatctaatggtt 168  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||    
T  32141634 cttactccaaatcttaaccattaattttcttttaatctgatggtt 32141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 10950956 - 10950919
Alignment:
Q  124 cttactccaaatcttaacccttaatttccttttaatct 161  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  10950956 cttactccaaatcttaaccattaattttcttttaatct 10950919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 42725942 - 42725987
Alignment:
Q  126 tactccaaatcttaacccttaatttccttttaatctaatggttcta 171  Q
    |||||||||||| ||||||||||||  ||||||||||| |||||||    
T  42725942 tactccaaatctcaacccttaatttaattttaatctaacggttcta 42725987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University