View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14880_high_5 (Length: 393)
Name: NF14880_high_5
Description: NF14880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14880_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 37258950 - 37258590
Alignment:
| Q |
17 |
aaaaaagacctaacaatacgatccggttacaaatcctatgaagcctacatccaacgtcaactcaacaaaactctcaacacaaaactacgaaaaatatgga |
116 |
Q |
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| T |
37258950 |
aaaaaagacctaacaatacgacccggttacaagtcctatgaagcctacatccaacgtcaactcaacaaaactctcaacacaaaactacgaaaaatatgga |
37258851 |
T |
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| Q |
117 |
caacacgcgactggaaccgcaagatcccagttttcgccaaattcttctccgaactcaagaccaagaatctcctccaagaaacatccaaagcattatgtat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37258850 |
caacacgcgactggaaccgcaagatcccagttttcgccaaattcttctccgaactcaagaccaagaatctcctccaagaaacatccaaagcattatgtat |
37258751 |
T |
|
| Q |
217 |
tggtgcacgtgttggacaagaagtcgaagctctacgacgaatcaacgtcgttgattccatcggaatggacctcgttccacatccaccgttggtcgtggaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37258750 |
tggtgcacgtgttggacaagaagtcgaagctctacgacgaatcaacgtcgttgattccatcggaatggacctcgttccacatccaccgttggtcgtggaa |
37258651 |
T |
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| Q |
317 |
ggtgatttccataaccaaccgtttggtaacgacacgttcgattttgaattctccaatgtct |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37258650 |
ggtgatttccataaccaaccgtttggtaacgacacgttcgattttgaattctccaatgtct |
37258590 |
T |
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