View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14880_high_8 (Length: 275)
Name: NF14880_high_8
Description: NF14880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14880_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 40440866 - 40440608
Alignment:
| Q |
1 |
tcacaaaacatgcaaaggtgattggccttctggtcagctaatctgctgcatagtaagttcgattggatataatgaataaaggttttgagggaatatgtgt |
100 |
Q |
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| T |
40440866 |
tcacaaaacatgcaaaggtgattggccttctggtcagctaatctgttgcatagtaagttcgattggatataatgaataaaggttttgagggaataggtgt |
40440767 |
T |
|
| Q |
101 |
ggtcacatgtaagtttttggttgttgtggtattggtggggttaggtttagtgtttgaggatggaggtttgaaaggtgaacagggagggtgatttaagggt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
40440766 |
ggtcacatgtaagtttttggttgtggtggtattggtggggttaggtttagtgtttgaggatggaggtttgaaaggtgaatagggagggtgattgaagggt |
40440667 |
T |
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| Q |
201 |
ttaaggggtgcatgtttggatgatttatagggacaagctaagcttgcagcttgttgtat |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40440666 |
ttaaggggtgcatgtttggatgatttatagggacaagctaagcttgcagcttgttgtat |
40440608 |
T |
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