View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14880_low_1 (Length: 570)
Name: NF14880_low_1
Description: NF14880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14880_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 9 - 553
Target Start/End: Original strand, 46266165 - 46266709
Alignment:
| Q |
9 |
aattatactaagtatataattaataatctcttaattctgacgcactgtgaattgaatcagtatgaataacttttcttgttggattatcttgatttgtgtt |
108 |
Q |
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| T |
46266165 |
aattatactaagtatataattaataatctcttaattctgacgcactgtgaattgaatcagtatgaataacttttcttgttggattatcttgatttgtgtt |
46266264 |
T |
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| Q |
109 |
tatcaaattctattttataggtgaaaattgtagttttttgcttacactctacttaaataactgacaataattctatcacatatagatacaaagtggactt |
208 |
Q |
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| T |
46266265 |
tatcaaattctattttataggtgaaaattgtagttttttgcttacactctacttaaataactgacaataattctatcacatatagatacaaagtggactt |
46266364 |
T |
|
| Q |
209 |
gagctgaaaattactaactagaatgaaacatgtaaagataacaaacttaacagaaaaacaaactaacctaactaacacgcaagcaagaggaaaaagtgaa |
308 |
Q |
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| T |
46266365 |
gagctgaaaattactaactagaatgaaacatgtaaagataacaaacttaacagaaaaacaaactaacctaactaacacgcaagcaagaggaaaaagtgaa |
46266464 |
T |
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| Q |
309 |
acatgctaatgaacaaaccttagtataaacaattctaattgggacagatatgatatgggttggagctaagattcaatagaaatttaccctactttgtgtt |
408 |
Q |
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| T |
46266465 |
acatgctaatgaacaaaccttagtataaacaattctaattgggacagatatgatatgggttggagctaagattcaatagaaatttaccctactttgtgtt |
46266564 |
T |
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| Q |
409 |
ttatccttacagatatgtttgaattagtgatatgcggttgaatgaagtgaaatattaattataggattccatatatgtactagaaagaagattacacttc |
508 |
Q |
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| T |
46266565 |
ttatccttacagatatgtttgaattagtgatatgaggttgaatgaagtgaaatattaattataggattccatatatgtactagaaagaagattacacttc |
46266664 |
T |
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| Q |
509 |
acaagaatgtaaacttttgatctagtgtttgttagagtacattaa |
553 |
Q |
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| T |
46266665 |
acaagaatgtaaacttttgatctagtgtttgttagagtacattaa |
46266709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 46023108 - 46022953
Alignment:
| Q |
9 |
aattatactaagtatataattaataatctcttaattctgacgcactgtgaattgaatcagtatgaataacttttcttgttggattatcttgatttgtgtt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46023108 |
aattatactaagtatataattaataatctcttaattctgacgcactgtgaattgaatcagtatgaataacttttcttgttggattatcttgatttgtgtt |
46023009 |
T |
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| Q |
109 |
tatcaaattctattttataggtgaaaattgtagttttttgcttacactctacttaa |
164 |
Q |
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| T |
46023008 |
tatcaaattctattttataggtgaaaattgtagttttttgcttgcactctacttaa |
46022953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 46022953 - 46022865
Alignment:
| Q |
192 |
agatacaaagtggacttgagctgaaaattactaactagaatgaaacatgtaaagataacaaact----taacagaaaaacaaactaacc |
276 |
Q |
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| T |
46022953 |
agatacaaagtggacttgagctgaaaattactaactagaatgaaacatgtaaggataacaaactaacctaacagaaaaacaaactaacc |
46022865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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