View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14880_low_12 (Length: 217)
Name: NF14880_low_12
Description: NF14880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14880_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 34312231 - 34312048
Alignment:
| Q |
18 |
tctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttct |
117 |
Q |
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| T |
34312231 |
tctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttct |
34312132 |
T |
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| Q |
118 |
ggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttc |
201 |
Q |
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| T |
34312131 |
ggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttc |
34312048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 34322740 - 34322923
Alignment:
| Q |
18 |
tctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttct |
117 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
34322740 |
tctaggacctttgatcttatcatgtgacaacttattaagtgtcaaagtaagtacaccattttccatcttagccttcactgaatccaaatcaacattttca |
34322839 |
T |
|
| Q |
118 |
ggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttc |
201 |
Q |
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| T |
34322840 |
ggcaatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttctcttcttctttcttc |
34322923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 34304565 - 34304748
Alignment:
| Q |
18 |
tctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttct |
117 |
Q |
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| T |
34304565 |
tctagtacttttaatctgatcatgagacaacttattaagtgtcaaagtaagaacaccattttctatcttagccttcacagaatccaaatcagcattttca |
34304664 |
T |
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| Q |
118 |
ggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttc |
201 |
Q |
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| T |
34304665 |
ggcaatctaaattgcctccaaaattttccatatgatctttcagctctatgccaacgatcacctttcttctccacttctttcttc |
34304748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 33426506 - 33426324
Alignment:
| Q |
18 |
tctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttct |
117 |
Q |
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| T |
33426506 |
tctagtacttttaatcttaccatgtgacaacttacgaagtgttaaagtaagaacaccattttccatcttggccttaaccgaatccaaatcagcattttca |
33426407 |
T |
|
| Q |
118 |
ggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttctt |
200 |
Q |
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| T |
33426406 |
ggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcaccttttttctcctcttctttctt |
33426324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 201
Target Start/End: Original strand, 34317109 - 34317267
Alignment:
| Q |
43 |
gacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttctggcaatctaaattgcctccagaatt |
142 |
Q |
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||||||||||||| |||||||||||| || ||||||||| | |||||||||| ||| ||||||||| |||| ||||||||||| || || |||||||||| |
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| T |
34317109 |
gacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctccagaatt |
34317208 |
T |
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| Q |
143 |
ttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttc |
201 |
Q |
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|||| || ||||||||| |||||||| ||||||||| |||||| ||||||||||| |
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| T |
34317209 |
ttccgtacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttc |
34317267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 201
Target Start/End: Complemental strand, 34314644 - 34314486
Alignment:
| Q |
43 |
gacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttctggcaatctaaattgcctccagaatt |
142 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||| |||||||| || || || |||||| |||| || |||||||||| || |||||||||| |
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| T |
34314644 |
gacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacggaatcaaaatcagcattctccggcaatctaagctgtctccagaatt |
34314545 |
T |
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| Q |
143 |
ttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttc |
201 |
Q |
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||||||| |||||| |||| |||||| ||||||||| ||||| ||||||||||| |
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| T |
34314544 |
ttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttc |
34314486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 25651244 - 25651361
Alignment:
| Q |
61 |
aaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttctggcaatctaaattgcctccagaattttccataagatctttcaa |
160 |
Q |
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|||||||| ||||||| |||||| || | ||||| || |||||||||||||||||||| ||||||| ||| ||||||||||||||| | ||||||| |
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| T |
25651244 |
aaagtaagaacaccatcttccatctttgtcttaatcgaatccaaatcaacattttctggtaatctaagttgtctccagaattttccacacatcctttcaa |
25651343 |
T |
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| Q |
161 |
ctctgtgccaatgatcac |
178 |
Q |
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|||| |||||| |||||| |
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| T |
25651344 |
ctctatgccaacgatcac |
25651361 |
T |
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