View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14880_low_2 (Length: 491)
Name: NF14880_low_2
Description: NF14880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14880_low_2 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 104 - 476
Target Start/End: Original strand, 21427166 - 21427536
Alignment:
| Q |
104 |
tgaaacatgagtggtgataggcaaaatagtgaaactgcaacatcaaaaatagatttgagagtaaagttgtcaggtgaacatcatcttcaacttatttcat |
203 |
Q |
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| T |
21427166 |
tgaaacatgagtggtgataggcaaaatagtgaaactgcaacatcaaaaatagatttgagagtaaagttgtcacatgaacatcatcttcaacttattccat |
21427265 |
T |
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| Q |
204 |
catttatgttttatcttttacagtatttaatatgctattgtttgtgttaatattaagcaattcgttttcttcgatagttcccactccgtaataatgtgtt |
303 |
Q |
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| T |
21427266 |
catttatgttttatcttttacagtatttaatatgctattgtttgtgttaatattaagcaattcgttttcttcgatcgttcccactccgtaataatgtgtt |
21427365 |
T |
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| Q |
304 |
tccttcctttcttctattgggattttttggttgaagacatgattcnnnnnnnnnntgttgcattgcataatgatatggagtcaatttttaagctgtgaaa |
403 |
Q |
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| T |
21427366 |
tccttcctttcttctattgggattttttggtggaagacatgattc--aaaaaaaatgttgcattgcataatgatatggagtcaatttttaagctgtgaaa |
21427463 |
T |
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| Q |
404 |
atcagttgacgatgggtactattatgcgaaacggatgccatgttattgcatgtgatgtttaatttagcctatg |
476 |
Q |
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| T |
21427464 |
atcagttgacgatgggtactattatgcgaaacggatgccatgttattgcatgtgatgtttaatttagcctatg |
21427536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 21427001 - 21427093
Alignment:
| Q |
19 |
agtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaagtgtggtgataacaaataaaaagaatgttattgtgaaacat |
111 |
Q |
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| T |
21427001 |
agtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaagtgtggtgataacaaataaaaagaatgttattgtgaaacat |
21427093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 1906 - 1824
Alignment:
| Q |
163 |
agtaaagttgtcaggtgaacatcatcttcaacttatttcatcatttatgttttatcttttacagtatttaatatgctattgtt |
245 |
Q |
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| T |
1906 |
agtaaagttgtcatattaacttcatctttaacttatttcatcatttatgttttatcttttacattattttatatgttattgtt |
1824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 45371534 - 45371487
Alignment:
| Q |
19 |
agtctatgctttcactccctagcggcattgatcaagcttaagaagatg |
66 |
Q |
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| T |
45371534 |
agtctctgctttcactctctagcgacaatgatcaagcttaagaagatg |
45371487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 30130720 - 30130679
Alignment:
| Q |
27 |
ctttcactccctagcggcattgatcaagcttaagaagatgac |
68 |
Q |
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| T |
30130720 |
ctttcattccctagcggcactgatgaagcttaagaagatgac |
30130679 |
T |
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