View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14880_low_4 (Length: 405)

Name: NF14880_low_4
Description: NF14880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14880_low_4
NF14880_low_4
[»] chr6 (1 HSPs)
chr6 (18-355)||(13778346-13778683)
[»] chr8 (3 HSPs)
chr8 (19-350)||(24969915-24970246)
chr8 (102-225)||(24969769-24969892)
chr8 (19-83)||(24969702-24969766)
[»] scaffold0183 (2 HSPs)
scaffold0183 (18-154)||(12801-12937)
scaffold0183 (149-353)||(14515-14719)
[»] chr5 (2 HSPs)
chr5 (22-126)||(23659978-23660082)
chr5 (22-126)||(23798488-23798592)
[»] chr1 (1 HSPs)
chr1 (22-125)||(22507849-22507952)
[»] chr7 (1 HSPs)
chr7 (24-125)||(18454009-18454110)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 13778683 - 13778346
Alignment:
Q  18 attgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13778683 attgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatcc 13778584  T
Q  118 ataacataagagcacagtggtttgtgaaccgccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaa 217  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13778583 ataacataatagcacagtggtttgtgaaccgccatctcttgagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaa 13778484  T
Q  218 ttgacacaacgcaaataacatcaatatcagctccagaactgtcaaagttcgatgtcatttcggcatcgacttttgtgaagttttctttaactacagaaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13778483 ttgacacaacgcaaataacatcaatatcagctccagaactgtcaaagttcgatgtcatttcggcatccacttttgtgaagttttctttaactacagaaag 13778384  T
Q  318 aggacgaaaaatcctttcagtggcatgttttcttatca 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13778383 aggacgaaaaatcctttcagtggcatgttttcttatca 13778346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 24969915 - 24970246
Alignment:
Q  19 ttgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatcca 118  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||| | |||||| |||||| || ||||||||||||||||||||| | ||||    
T  24969915 ttgattttagcttggataaacatgggcttgagatgacttttcatgtgatgattaggtttcttaaacatggcttgttcaccttcgacacaaccattgtcca 24970014  T
Q  119 taacataagagcacagtggtttgtgaaccgccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaat 218  Q
    |||| ||| ||||||||||||| ||||| | ||| || |||||||||||||||| ||| | ||| |||||||||||||| |||||||| ||| |||||||    
T  24970015 taacgtaatagcacagtggtttatgaacagtcatttcctcagtgaaatctcccttgtctttagtgatttctgatgttacgtcatattcaactgggagaat 24970114  T
Q  219 tgacacaacgcaaataacatcaatatcagctccagaactgtcaaagttcgatgtcatttcggcatcgacttttgtgaagttttctttaactacagaaaga 318  Q
    ||||| | |||| || || || | ||||||| | |||||   ||||||||| ||||||||| ||||  ||||||  |  |  ||||| ||||| ||||||    
T  24970115 tgacagagcgcagatgacgtcgaaatcagcttctgaactagtaaagttcgacgtcatttcgacatcatcttttgctagatcctcttttactacggaaaga 24970214  T
Q  319 ggacgaaaaatcctttcagtggcatgttttct 350  Q
    ||| || |||| |||||||||||| |||||||    
T  24970215 ggaggataaattctttcagtggcaggttttct 24970246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 24969769 - 24969892
Alignment:
Q  102 gacacaaccactatccataacataagagcacagtggtttgtgaaccgccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgttacatca 201  Q
    |||||||||| | |||||||| ||| ||||||||||||| ||||| | ||| || |||||||||||||||| ||| | ||| ||||||||| |||| |||    
T  24969769 gacacaaccattgtccataacgtaatagcacagtggtttatgaacagtcatttcctcagtgaaatctcccttgtctttagtgatttctgattttacgtca 24969868  T
Q  202 tattcgactaggagaattgacaca 225  Q
    ||||| | | ||||||||||||||    
T  24969869 tattcaattgggagaattgacaca 24969892  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 24969702 - 24969766
Alignment:
Q  19 ttgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaa 83  Q
    ||||||||||||||||||||||   | || |||||||||||||||||||||| | ||||||||||    
T  24969702 ttgattttagcttggataaacatgagtttgagatgacttttcatgtgatgattaggtttctcaaa 24969766  T

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Target: scaffold0183 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 12801 - 12937
Alignment:
Q  18 attgattttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||  |||||    
T  12801 attgattttagcttggataaacaaaggcttaagatgacttttcatgtaatgatcaggtttctcaaacattgcatgttcacctttgacacaaccgttatcc 12900  T
Q  118 ataacataagagcacagtggtttgtgaaccgccatct 154  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  12901 ataacataatagcatagtggtttgtgaaccgccatct 12937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 149 - 353
Target Start/End: Original strand, 14515 - 14719
Alignment:
Q  149 ccatctcttcagtgaaatctccctcgtcctcagtaatttctgatgttacatcatattcgactaggagaattgacacaacgcaaataacatcaatatcagc 248  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||| |||||| |||||| ||| |||||||||||||||||||||||| | ||| |     
T  14515 ccatctctttagtgaaatctccctcgtcttcagtaatttatgatgttagatcatactcgacttggataattgacacaacgcaaataacatcgaaatctgg 14614  T
Q  249 tccagaactgtcaaagttcgatgtcatttcggcatcgacttttgtgaagttttctttaactacagaaagaggacgaaaaatcctttcagtggcatgtttt 348  Q
    | ||||||| |  |||||||||||||| ||  || |  ||||||| ||||||||||| | |||||||||| || |||||||||||| ||||| | |||||    
T  14615 ttcagaactattgaagttcgatgtcatgtcatcaccctcttttgtaaagttttcttttattacagaaagatgaggaaaaatccttttagtggtaggtttt 14714  T
Q  349 cttat 353  Q
    |||||    
T  14715 cttat 14719  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 23660082 - 23659978
Alignment:
Q  22 attttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataa 121  Q
    |||||||||||||| ||||||||||| || |||  || |||||||| |||| || | || ||||| ||||| |  ||||| ||||||||| ||||||| |    
T  23660082 attttagcttggatgaacaaaggcttgaggtgatgttgcatgtgataatcaggtctttcgaacatagcctgctggccttcaacacaaccattatccatca 23659983  T
Q  122 cataa 126  Q
    |||||    
T  23659982 cataa 23659978  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 23798488 - 23798592
Alignment:
Q  22 attttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataa 121  Q
    |||||||||||||| ||||||||||| || |||  || |||||||| |||| || | || ||||| ||||| |  ||||| ||||||||| ||||||| |    
T  23798488 attttagcttggatgaacaaaggcttgaggtgatgttgcatgtgataatcaggtctttcgaacatagcctgctggccttcaacacaaccattatccatca 23798587  T
Q  122 cataa 126  Q
    |||||    
T  23798588 cataa 23798592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 22507849 - 22507952
Alignment:
Q  22 attttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataa 121  Q
    ||||| ||||||||||||| ||| || |||||||| ||||| |||| |||| || |||| ||||| || ||||  ||||||||||| | | ||| |||||    
T  22507849 attttggcttggataaacagaggtttgagatgactattcatatgataatcaggtctctcgaacatagcatgttggccttcgacacatcaattattcataa 22507948  T
Q  122 cata 125  Q
    ||||    
T  22507949 cata 22507952  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 18454110 - 18454009
Alignment:
Q  24 tttagcttggataaacaaaggcttaagatgacttttcatgtgatgatcaagtttctcaaacattgcctgttcaccttcgacacaaccactatccataaca 123  Q
    |||||| | |||||||| ||| || |||||| | ||||| || | |||| || |||||||||| || ||||  ||||||||||||||| ||| |||||||    
T  18454110 tttagccttgataaacagaggtttgagatgaatcttcatatggtaatcaggtctctcaaacatagcatgttggccttcgacacaaccattattcataaca 18454011  T
Q  124 ta 125  Q
    ||    
T  18454010 ta 18454009  T

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