View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14881_high_6 (Length: 234)
Name: NF14881_high_6
Description: NF14881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14881_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 53699345 - 53699544
Alignment:
| Q |
19 |
gaaatattaaaagaaaaggtacaaagggtatttcaatctaccaatatcaaagtcgtttaattagaaggttacttcctaagctggcatacaatccagaaag |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53699345 |
gaaatattaaaataaaaggtacaaagggtatttcaatctaccaatatcaaagtcgtttaattagaaggtaacttcctaagctggcatacaatccagaaag |
53699444 |
T |
|
| Q |
119 |
ttaacacaccacttagagaaataattacttcaaatggagaactg-aaaaaatgacttttaaaggcgcaacgtacttgattttgcatttggtgtatgtgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53699445 |
ttaacacaccacttagagaaataattacttcaaatggagaactgaaaaaaatgacttttaaaggcgcaacgtacttgattttgcatttggtgtatgtgtt |
53699544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University