View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14881_high_7 (Length: 232)
Name: NF14881_high_7
Description: NF14881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14881_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 18905068 - 18904867
Alignment:
| Q |
14 |
aatattgaaagatcagaaaaaactacttcataaccacatagtaagaacattattcaagaaccaaatttttccagtgagtcaaaaatcacattcacaaaag |
113 |
Q |
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| T |
18905068 |
aatattgaaagatcagaaaaaactacttcatacccacatagtaagaacattattcaagaaccaaacttttccagtgagtcaaaaatcacattcacaaaag |
18904969 |
T |
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| Q |
114 |
gggttaaacaaaagcatatagagaatcataaaaactaaaactttaggagaaatgttgaaagatcagagaaactactcatgtatagtaacaacattattca |
213 |
Q |
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| T |
18904968 |
gggttaaacaaaagcatatagagaatcataaaaactaaaactttaggagaaatgttgaaagatcagagaaactactcatgcatagtaacaacattattca |
18904869 |
T |
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| Q |
214 |
ag |
215 |
Q |
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|| |
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| T |
18904868 |
ag |
18904867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 18904806 - 18904745
Alignment:
| Q |
104 |
ttcacaaaaggggttaaacaaaagcatatagagaatcataaaaactaaaactttaggagaaa |
165 |
Q |
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|||||||||||| || |||| |||||||| |||| |||||||||||||||||||||||||| |
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| T |
18904806 |
ttcacaaaagggtttgaacattagcatataaagaaacataaaaactaaaactttaggagaaa |
18904745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 18905106 - 18905052
Alignment:
| Q |
126 |
agcatatagagaatcataaaaactaaaactttaggagaaatgttgaaagatcaga |
180 |
Q |
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|||||||| ||||||||||||||||||||||| || |||| ||||||||||||| |
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| T |
18905106 |
agcatataaagaatcataaaaactaaaactttttgaaaaatattgaaagatcaga |
18905052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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