View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14881_low_1 (Length: 467)
Name: NF14881_low_1
Description: NF14881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14881_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 50 - 453
Target Start/End: Original strand, 17455123 - 17455525
Alignment:
| Q |
50 |
aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaa |
149 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17455123 |
aggggacattggaagcagctctgcaggttcaaaccttgaagacgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaa |
17455222 |
T |
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| Q |
150 |
catagtctttatagacccaatgaattggtataattctttatatcgattctttattaatctctttatttattttttatcatacgcaaaaggtttattaagt |
249 |
Q |
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| T |
17455223 |
catagtctttatagacccaatgaattggtataattctttatatcgattctttattaatcgctttatttattttttatcatacgcaaaaggtttattaagt |
17455322 |
T |
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| Q |
250 |
gactctccaatgtatttctctaaacatgtcgagttgttgcaatttcagttttcataatttacaactattaaatgttacttctttgatgtgcttattatgg |
349 |
Q |
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| T |
17455323 |
gattctcc-atgtattgctctaaacatgtcaagttgttgcaatttcaattttcataatttacaactattaaatgttacttctttgatgtgcttattatgg |
17455421 |
T |
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| Q |
350 |
attttgcagcattttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaat |
449 |
Q |
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| T |
17455422 |
attttacagcattttccgaagaatgtaattaaagatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaat |
17455521 |
T |
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| Q |
450 |
tcgt |
453 |
Q |
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|||| |
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| T |
17455522 |
tcgt |
17455525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 17393749 - 17393609
Alignment:
| Q |
50 |
aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaa |
149 |
Q |
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|||| ||||||| |||||||||||| | ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
17393749 |
agggaacattgggagcagctctgcacgatcaaaacttgaagatgacgaaattgatgctgaaatatatattcaaccgggaaatcctcactttattgcaaaa |
17393650 |
T |
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| Q |
150 |
catagtctttatagacccaatgaattggtataattctttat |
190 |
Q |
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||| || || ||||| |||||||||||| |||||||||| |
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| T |
17393649 |
tatattcattccagacctaatgaattggtaaaattctttat |
17393609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 17461363 - 17461459
Alignment:
| Q |
56 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaacat |
152 |
Q |
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| T |
17461363 |
cattggaagtagctctgcagctccaaatcttgaagatgatgaaattgatgctgaaatgtatattcagccaggaaatccatacttctatgcaaaacat |
17461459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 17393341 - 17393255
Alignment:
| Q |
363 |
ttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaat |
449 |
Q |
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| T |
17393341 |
ttccaaagaatgttatcaaggatttctgcctctgcttcacaaaacatgtcacccttgaatgttgccactgtaaggtataattctaat |
17393255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 17461572 - 17461661
Alignment:
| Q |
351 |
ttttgcagcattttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
440 |
Q |
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| T |
17461572 |
ttttgcagaatatttcgaagaatgtcatcaaggatttctgcctttgctttacaaagcatatcaccattgtatgttgccactgcaaggtat |
17461661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 17393435 - 17393368
Alignment:
| Q |
281 |
agttgttgcaatttcagttttcataatttacaactattaaatgttacttctttgatgtgcttattatg |
348 |
Q |
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| T |
17393435 |
agttgttgcaattttagttttcttaacttacgatcatttcatgttacttctttgatgtacttattatg |
17393368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 40235230 - 40235135
Alignment:
| Q |
56 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaaca |
151 |
Q |
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| T |
40235230 |
cattggaagcagctctgcagctccaaaacatgaagatgatgaaattgatgttgaaatgtatattcagccaggaaatccttacttctatgcaaaaca |
40235135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 40234861 - 40234789
Alignment:
| Q |
368 |
aagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
440 |
Q |
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| T |
40234861 |
aagaatgtcgttaaggatttctgcctttgctttacaaagcatatcagccttgtatgttgccactgcaaggtat |
40234789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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