View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14881_low_11 (Length: 227)
Name: NF14881_low_11
Description: NF14881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14881_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 46011242 - 46011028
Alignment:
| Q |
7 |
ttatttgtcctatacatttccaaatcatagctgaaataatttcaaaatactttgtcttggtattgatattgatattgatattggttgatgtggatgttgt |
106 |
Q |
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| T |
46011242 |
ttatttgtcctatacatttccaaatcatagctgaaataatttcaaaatactttgtcttggtattgatattgatattg------gttgatgtggatgttgt |
46011149 |
T |
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| Q |
107 |
taacaaatgatgaagttgtttggaagcgatgtgaaaagtgtgagtagctacataactatcagtggcagcgagccaatattcttcaattgttgttgccctt |
206 |
Q |
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| T |
46011148 |
taacaaatgatgaagttgtttggaagtgatgtgaaaagtgtgagtagctacataactatcagtggcagcgagccaatattcttcaattgttgttgccctt |
46011049 |
T |
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| Q |
207 |
ttaatggaaatgggattatca |
227 |
Q |
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| T |
46011048 |
ttaatggaaatgggattatca |
46011028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 13116110 - 13115909
Alignment:
| Q |
7 |
ttatttgtcctatacatttccaaatcatagctgaaataatttcaaaatactttgtcttggtattgatattgatattgatattggttgatgtggatgttgt |
106 |
Q |
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| T |
13116110 |
ttatttgcgctatacatttccaaatcatagctgaaataatttcaaaatattttgttttgatattgtta---------------gatgttgtggatggtgt |
13116026 |
T |
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| Q |
107 |
taacaaatgatgaagttgtttggaagcgatgtgaaaagtgtgagtagctacataactatcagtggcagcgagccaatattcttcaattgttgttgccctt |
206 |
Q |
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| T |
13116025 |
taccaaatggtgaagttggttggaagtgatgtgaaaagtgtgagtagctacatcactgtggttagtagcaagccaatattcctcaacacatgttgccctt |
13115926 |
T |
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| Q |
207 |
ttaatggaaatgggatt |
223 |
Q |
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| T |
13115925 |
ttgatggaaatgggatt |
13115909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 15924286 - 15924222
Alignment:
| Q |
7 |
ttatttgtcctatacatttccaaatcatagctgaaataatttcaaaatactttgtcttggtattg |
71 |
Q |
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|||||||| ||||||||||||| ||| ||||||||||||||||||||||||| || | ||||||| |
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| T |
15924286 |
ttatttgtgctatacatttccatatcgtagctgaaataatttcaaaatacttagtatcggtattg |
15924222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 10420029 - 10419992
Alignment:
| Q |
22 |
atttccaaatcatagctgaaataatttcaaaatacttt |
59 |
Q |
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| T |
10420029 |
atttccatatcatcgctgaaataatttcaaaatacttt |
10419992 |
T |
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