View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14881_low_2 (Length: 402)
Name: NF14881_low_2
Description: NF14881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14881_low_2 |
 | |
|
| [»] scaffold0623 (3 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0483 (1 HSPs) |
| | |
|
| [»] scaffold0109 (1 HSPs) |
| | |
|
| [»] scaffold0150 (1 HSPs) |
| | |
|
| [»] scaffold0683 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0623 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: scaffold0623
Description:
Target: scaffold0623; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 4922 - 5082
Alignment:
| Q |
94 |
ttaatataaaaataacataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccatac |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
4922 |
ttaatataaaaataacataccagctttggaatctcgtttagttttgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctatac |
5018 |
T |
|
| Q |
194 |
cattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
5019 |
cattttcttgacgaggacactacaaacaataaaataagt--ttgtatcaattaaattatttatatt |
5082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0623; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 9020 - 9180
Alignment:
| Q |
94 |
ttaatataaaaataacataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccatac |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
9020 |
ttaatataaaaataacataccagctttggaatctcgtttagttttgaaatgagaatctctttcataaacctcatcacaaaatacccg---caatctatac |
9116 |
T |
|
| Q |
194 |
cattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
9117 |
cattttcttggcgaggacactacaaacaataaaataagt--ttgtatcaattaaattatttatatt |
9180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0623; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 5592 - 5752
Alignment:
| Q |
94 |
ttaatataaaaataacataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccatac |
193 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||| |
|
|
| T |
5592 |
ttaatataaaaataacatatcagctttggaatcacatttagttttgaaatgagaatctctttcataaacctcctcacaaactaccc---acaatctatac |
5688 |
T |
|
| Q |
194 |
cattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5689 |
catttttttggcgaggacactacaaaaaataaaataagt--ttgtatcaataaaattatttatatt |
5752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 124827 - 124971
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
124827 |
ataccagctttggaatctcatttagttttgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgagg |
124923 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
124924 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
124971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 16315297 - 16315153
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
16315297 |
ataccagctttggaatctcatttagttttgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgagg |
16315201 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
16315200 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
16315153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 14646488 - 14646632
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
14646488 |
ataccagctttggaatctcatttagtttcgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgagg |
14646584 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14646585 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
14646632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 12760367 - 12760252
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
12760367 |
ataccagctttggaatctcatttagttttgaaatgaaaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgaga |
12760271 |
T |
|
| Q |
210 |
acactacaaaaaataaaat |
228 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
12760270 |
acactacaaaaaataaaat |
12760252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 54709747 - 54709899
Alignment:
| Q |
94 |
ttaatataaaaata-acataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccata |
192 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
54709747 |
ttaatataaaaaaagatataccagctttggaatctcatttagttttgaaatgagaatctttttcataaacctcatcacaaagtaccc---acaatttata |
54709843 |
T |
|
| Q |
193 |
ccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54709844 |
ccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaa |
54709899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 21665227 - 21665379
Alignment:
| Q |
94 |
ttaatataaaaata-acataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccata |
192 |
Q |
| |
|
|||||||||||| | | |||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
21665227 |
ttaatataaaaaaagatataccaactttggaatctcatttagttttgaaatgagaatctttttgataaacctcatcacaaagtaccc---acaatttata |
21665323 |
T |
|
| Q |
193 |
ccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaa |
248 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21665324 |
ccatttttttggcgaggacactacaaaaaataaaataagtaattgtagcaataaaa |
21665379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 2738549 - 2738511
Alignment:
| Q |
48 |
agacccgcgcgatagcgcgggtagaaagtctagttactt |
86 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2738549 |
agacccgcgcgatagcgcgggtttaaagtctagttactt |
2738511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 2380 - 2524
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2380 |
ataccagctttgggatctcatttagttttgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgagg |
2476 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
2477 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
2524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0109 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0109
Description:
Target: scaffold0109; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 47167 - 47311
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
47167 |
ataccagctttgggatctcatttagttttgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgagg |
47263 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
47264 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
47311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 30867930 - 30867786
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
30867930 |
ataccagctttggaatctcatttagtttcgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgagg |
30867834 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
30867833 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
30867786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 34207606 - 34207750
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
34207606 |
ataccagctttggaatctcatttagtttcgaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgagg |
34207702 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
34207703 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
34207750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2770061 - 2770149
Alignment:
| Q |
1 |
tgattgagttgattagaataattatatattgatcaatgatttacaaaagacccgcgcgatagcgcgggtagaaagt-ctagttacttaa |
88 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2770061 |
tgattgagttgattagaataattgcacattgatcaatgatttacaatagacccgcgcgatagcgcgggtagaaagtcctagttacttaa |
2770149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 8979338 - 8979271
Alignment:
| Q |
107 |
aacataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaag |
174 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
8979338 |
aacataccagctttggaatcatattcgaatttgaaatgataacctctttcataaacctcatcacaaag |
8979271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 14692976 - 14693120
Alignment:
| Q |
110 |
ataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgagg |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
14692976 |
ataccagctttggaatctcatttagttttgaaatgagaatctctttcataaacctaatcacaaagtacccg---caatctataccattttcttggcgagg |
14693072 |
T |
|
| Q |
210 |
acactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14693073 |
acactacaaaaaataaaataagt--ttgtataaataaaattatttatatt |
14693120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 20576700 - 20576789
Alignment:
| Q |
94 |
ttaatataaaaataacataccagctttggaatctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaa |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20576700 |
ttaatataaaaataacatatcagctttggaatctcgtttagttttgaaataagaatctctttcataaacctcatcacaaagtacccgcaa |
20576789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 14184472 - 14184633
Alignment:
| Q |
94 |
ttaatataaaaataacataccagctttggaa-tctcatttagatttgaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccata |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||| | ||| |
|
|
| T |
14184472 |
ttaatataaaaataacataccagctttggaaatctcatttagttttgaaatgagaatctatgtgataaacctcatcacaaagtacccgcaa---tttata |
14184568 |
T |
|
| Q |
193 |
ccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||| |
|
|
| T |
14184569 |
ccattttcttggcgaggacactacaaaaaataaaataa--atttgtatcaatcaaattgtttatatt |
14184633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 3032 - 2917
Alignment:
| Q |
139 |
gaaatgagaatctctttcataaacctcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3032 |
gaaatgagaatctctttcataaacctcatcacaaagtacccg---caatctataccattttcttggcgaggacactacaaaatataaaataagt--ttgt |
2938 |
T |
|
| Q |
239 |
atcaataaaattatttatatt |
259 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
2937 |
ataaataaaattatttatatt |
2917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0683 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0683
Description:
Target: scaffold0683; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 5116 - 5071
Alignment:
| Q |
340 |
tttctattgaattgcgtgtttggtgcattgagctttccaaataata |
385 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5116 |
tttctattgaattgtgtgtttggtgcattgagctttcctaataata |
5071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University