View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14881_low_3 (Length: 385)
Name: NF14881_low_3
Description: NF14881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14881_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 8816407 - 8816037
Alignment:
| Q |
1 |
atacatggtagtgatcataaagttcaatgaatattattatctgaagtatgatcaacggaatgcaaaattacataaatcactttatgtagattttgtaaag |
100 |
Q |
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| T |
8816407 |
atacatggtagtgatcataaagttcaatgaatattattatctcaagtatgatcaacagaatgcaaaattacataaatcactttatgtagattttgtaaag |
8816308 |
T |
|
| Q |
101 |
gtgatagagtacttggaatttgctattgttatcaggcacaatctgaaagaaaaagttcacttatcctgaagattcaaaagtgcttataaattgtacatga |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8816307 |
gtgataaagtacttggaatttgctattgttatcaggtacaatctgaaagaaaaagttcacttatcctgaagattcaaaagtgcttataaattgtacatga |
8816208 |
T |
|
| Q |
201 |
gtaaacaaagcaagtctaccaatggaagaacacaagtgtcaaagttttcaggtatcctattggctcaagtaagttaaaatttaatccaaatggaaaattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8816207 |
gtaaacaaagcaagtctaccaatggaagaacacaagtgtcaaagttttcaggtatcctattggctcaggtaagttaaaatttaatccaaatggaaaattt |
8816108 |
T |
|
| Q |
301 |
gaagctgacttttctggtgtacagcaatgaaaagtgctttgcgttacagttagaatatttatgagatgatt |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8816107 |
gaagctgacttttctggtgtacagcaatgaaaagtgctttgcgttacagttagaatatttatgacatgatt |
8816037 |
T |
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