View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14881_low_6 (Length: 247)
Name: NF14881_low_6
Description: NF14881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14881_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 46010997 - 46010810
Alignment:
| Q |
4 |
gtgagatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctgaaaatgcatctccaagaa |
103 |
Q |
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| T |
46010997 |
gtgagatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctgaaaatgcatctccaagaa |
46010898 |
T |
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| Q |
104 |
tgtgagcccagctcagtcccactgagagtcctccacatttgaagaatgtgaactnnnnnnntgcttacataatttagttgctttaaat |
191 |
Q |
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| T |
46010897 |
tgtgagcccagctcagtcccactgagagtcctccacatttgaagaatgtgaactaaaaaaatgcttacataatttagttgctttaaat |
46010810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 13115874 - 13115721
Alignment:
| Q |
4 |
gtgagatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctgaaaatgcatctccaagaa |
103 |
Q |
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| T |
13115874 |
gtgagattttgcttgtgaagagattttggtggagcttggccagctagtatttgactccatttgctgatgaagttaaaagctgaaaatgcatctccaagga |
13115775 |
T |
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| Q |
104 |
tgtgagcccagctcagtcccactgagagtcctccacatttgaagaatgtgaact |
157 |
Q |
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| T |
13115774 |
tgtgagcccaactcattcccacagagagtcctccacatttgaagtgtgtgaact |
13115721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 15924047 - 15923908
Alignment:
| Q |
7 |
agatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctgaaaatgcatctccaagaatgt |
106 |
Q |
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|||||||| ||||| |||||||||||| | | |||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| |
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| T |
15924047 |
agatttggaatgtgaagagattttggttgggattgaccagctagtatgtgactccatttggtgatgaaattaaaagctgaaaatgcatctccaaggatgt |
15923948 |
T |
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| Q |
107 |
gagcccagctcagtcccactgagagtcctccacatttgaa |
146 |
Q |
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| T |
15923947 |
gagcccaacttagtccaacagagagtcccccacatttgaa |
15923908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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