View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_high_10 (Length: 381)
Name: NF14882_high_10
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 12927435 - 12927081
Alignment:
| Q |
10 |
aaaatgtcgctgctccaaaaaatacgagggaatcagtcatatatatgtatgtaataacatgaaatatatatcatgaaataaatcactacatttatgtaac |
109 |
Q |
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| T |
12927435 |
aaaatgtcgctactccaaaaaatacgagggaatcagtcatatatatgta----ataacatgaaatatatatcatgaaataaatcactacatttatgtaac |
12927340 |
T |
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| Q |
110 |
ataacacaaacattccaaaatggatgatctcaaactaccttctcatgattcctcttcaatccctctcattgctaggctcgatcatttggaattcgttgtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12927339 |
ataacacaaacattccaaaatggatgatctcaaactaccttctcatgattcctcttcaatccctctcattgctaggctcgatcatttggaattcgttgtg |
12927240 |
T |
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| Q |
210 |
agcttatttttcattaatttcttcttactacaattgtcatattaaaatcaattttgtcacatgtatcaaattaatttttcctatgtgtatttttgggttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12927239 |
agcttatttttcattaatttcttcttactacaattgtcatattaaaatcaattttgtcacatgtatcaaattaatttttcctatgtgtatttttgggttt |
12927140 |
T |
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| Q |
310 |
gatgtgacagatgaagtatttagaaagaaaacaaagatgtggaagcaatgttattactg |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12927139 |
gatgtgacagatgaagtatttagaaagaaaacaaagatgtggaagcaatgttattactg |
12927081 |
T |
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