View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14882_high_12 (Length: 341)
Name: NF14882_high_12
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 8539326 - 8539001
Alignment:
| Q |
1 |
aaaatttcaaaatcgtttaatatttcatgtcgactatcaactttttgtgtcaaaataacattttcaaaagaagnnnnnnnnnctagtcgcattgaagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8539326 |
aaaatttcaaaatcgtttaatattccatgtcgaccatcaactttttgtgtcaaaataacattttcaaaagaa--aaaaaaaactagtcgcattgaagaag |
8539229 |
T |
|
| Q |
101 |
gaaaattaatggataggacatatcaaattagctatcacttgaaggctttcagttctgataggaagattaaattcattatatataaacaagatacattcac |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
8539228 |
gaaaattaatggataggacatatcacattagctatcacttgaaggctttcagttctgataggaagattaaattcgttttatataaacaagatacattcac |
8539129 |
T |
|
| Q |
201 |
ctgtcacatatgcacatagctaatgttcatataccacagattcaaaaccaatcagaaaaacagtgctatatcttttccaaagtatgaattt-----aaat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8539128 |
ctgtcacatatgcacatagctaatgttcatataccacagattcaaaaccaattagaaaaacagtgctatatcttttccaaagtatgaatttaattcaaat |
8539029 |
T |
|
| Q |
296 |
cttctgtacaaacagtttgattcacttg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8539028 |
cttctgtacaaacagtttgattcacttg |
8539001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University