View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_high_13 (Length: 340)
Name: NF14882_high_13
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 28258560 - 28258816
Alignment:
| Q |
11 |
tatcctaaaatatacatcaaagacatcttgagatgatatattgagttggttatcattcactacaaaacataaatgtgagctagtattgttatttgatcag |
110 |
Q |
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| T |
28258560 |
tatcctaaaatatacatcaaagacatcttgagatgatatattgagttggttatcattcactacaaaacataaatgtgagctagtattgttatttgatcag |
28258659 |
T |
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| Q |
111 |
gtatggcagatcaaggcattgtttatgcaaaagatttcgtggatgctttgaagaaaaaacatgcttctaattcttacnnnnnnntggtgagtaaccttgt |
210 |
Q |
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| T |
28258660 |
gtatggcagatcaaggcattgtttatgcaaaagatttcgtggatgctttgaagaaaaaacatgcttctaattcttacaaaaaaatggtgagtaaccttga |
28258759 |
T |
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| Q |
211 |
atattttagattgacaataaaataaaaaaccaccaaatcaactaaggtaattcaaaa |
267 |
Q |
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| T |
28258760 |
atattttacattgacagtaaaataaaaaaccaccaaatcaactaaggtaattcaaaa |
28258816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 52 - 268
Target Start/End: Original strand, 29928059 - 29928276
Alignment:
| Q |
52 |
tgagttggttatcattcactacaaaacataaatgtgagctagtattgttatttgatcaggtatggcagatcaaggcattgtttatgcaaaagatttcgtg |
151 |
Q |
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| T |
29928059 |
tgagttggttatcattcactacaaatcataaatgtgagctagtattgttatttgatcaggtatggcagatcaaagtcttgtttatgcaaaagatttggtg |
29928158 |
T |
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| Q |
152 |
gatgctttgaagaaaaaacatgcttctaattcttacnnnnnnntggtgagtaaccttgtatattttagattgac-aataaaataaaaaaccaccaaatca |
250 |
Q |
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| T |
29928159 |
gatgctttgaagaaaaaacatgcttctaattcttacaaaaaaatggtgagtatccttgaatattttacattgacaaataaaataaaaaaccaccaaatca |
29928258 |
T |
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| Q |
251 |
actaaggtaattcaaaat |
268 |
Q |
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| T |
29928259 |
accaaggtaattcaaaat |
29928276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 28258850 - 28258894
Alignment:
| Q |
282 |
aaacaggtgatatatgtggaagcatgttattctgcgagcatattt |
326 |
Q |
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| T |
28258850 |
aaataggtgatatatgtggaagcatgttattctgcgagcttattt |
28258894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 29928309 - 29928352
Alignment:
| Q |
282 |
aaacaggtgatatatgtggaagcatgttattctgcgagcatatt |
325 |
Q |
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| T |
29928309 |
aaataggtgatatatgtggaagcatgttattctgcgagcttatt |
29928352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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