View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_high_8 (Length: 396)
Name: NF14882_high_8
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 213 - 376
Target Start/End: Original strand, 24200089 - 24200251
Alignment:
| Q |
213 |
aaatattttcctataatacatcatccagtgaaatatattttctttgctgagttaatgttactgatagtcgcagcacagcttttctgatagaccaaatggt |
312 |
Q |
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| T |
24200089 |
aaatattttcctataatacatcatccagtgaaatatattttctttgttgagttaatgttactcatagtcgcagcacagcttttctgatagaccaaatggt |
24200188 |
T |
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| Q |
313 |
cattttgatattaaaatgtagctgaaatgctacatatatacacttatatagtcaatatttcgat |
376 |
Q |
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| T |
24200189 |
ca-tttgatattaaaatgtagctgaaatgctacatatatacacttatatagtcagtatttcgat |
24200251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 3680320 - 3680441
Alignment:
| Q |
14 |
tgagaagaagaaataatagagctcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaa |
113 |
Q |
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| T |
3680320 |
tgagaagatgaaataattgtactcataagttttgacattctaccggccaacactttagcaagaagtttataaaggcatcctaaaagggaaataggacgaa |
3680419 |
T |
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| Q |
114 |
actccttaaaagtaaaaggatt |
135 |
Q |
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| T |
3680420 |
actccttcaaagtaaacggatt |
3680441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 6230212 - 6230034
Alignment:
| Q |
20 |
gaagaaataatagagctcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactcct |
119 |
Q |
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| T |
6230212 |
gaagaaataatagaactcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaaaagggaaatcggacgaaactcct |
6230113 |
T |
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| Q |
120 |
taaaagtaaaaggattgttgacctttggtataagagtaacaaagtagcacnnnnnnntcctcggcaccacctcattacc |
198 |
Q |
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| T |
6230112 |
tcaaagtaaaaggattgttgacctttggtataagagtaacaaagtaggacaaaaaactcttcggcaccacctcattacc |
6230034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 38969075 - 38968891
Alignment:
| Q |
14 |
tgagaagaagaaataatagagctcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaa |
113 |
Q |
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| T |
38969075 |
tgagaagatgaaataatagagctcataaattttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagcgggaaataggacgaa |
38968976 |
T |
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| Q |
114 |
actccttaaaagtaaaaggattgttgacctttggtataagagtaacaaagtagcacnnnnnnntcctcggcaccacctcattacc |
198 |
Q |
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| T |
38968975 |
actccttcaaaatgaaaggatttttaatctttgggattaaagtaacaaaataggacaaaaaactcctcggcaccacctcattacc |
38968891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 55351520 - 55351417
Alignment:
| Q |
59 |
gccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactccttaaaagtaaaaggattgttgacctttggtataagagtaa |
158 |
Q |
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|||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || || | ||||| |
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| T |
55351520 |
gccaacactttagcaagaagtttgtaaaggcaccctaagagggaaataggacgaaactccttcaaagtgaaaggattgtttaccttagggattaaagtaa |
55351421 |
T |
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| Q |
159 |
caaa |
162 |
Q |
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|||| |
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| T |
55351420 |
caaa |
55351417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 44682460 - 44682326
Alignment:
| Q |
59 |
gccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactccttaaaagtaaaaggattgttgacctttggtataagagtaa |
158 |
Q |
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|||||||||| |||||||||||||| | ||||||||||||||| || ||| || ||||||| ||||| |||||||| ||||||||||| || | ||||| |
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| T |
44682460 |
gccaacactt--gcaagaagtttgtagagacatcctaagagggatatgggatgatactccttcaaagtgaaaggattattgacctttggaattaaagtaa |
44682363 |
T |
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| Q |
159 |
caaagtagcacnnnnnnntcctcggcaccacctcatt |
195 |
Q |
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| T |
44682362 |
caaaataggacaagaaactcctcggcaccacctcatt |
44682326 |
T |
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