View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_low_1 (Length: 631)
Name: NF14882_low_1
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 2666968 - 2667579
Alignment:
| Q |
1 |
acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2666968 |
acagcccaagctgcaaaggacaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaa |
2667067 |
T |
|
| Q |
101 |
tgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667068 |
tgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgc |
2667167 |
T |
|
| Q |
201 |
aactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667168 |
aactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgtt |
2667267 |
T |
|
| Q |
301 |
gattgagattattagctactaatactatgtttcaataatcttgtattgtaatttgtttttcttgaatttggtttttaccaaatgcactttcttttagaat |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667268 |
gattgagattattagc------tactatgtttcgataatgttgtattgtaatttgtttttcttgaatttggtttttaccaaatgcactttcttttagaat |
2667361 |
T |
|
| Q |
401 |
aagttacgattccctcatatct--agaggtgagagggaaatgtattatgtaatctctatttttctagtttctagtttgaaccttgttcttcttgtgataa |
498 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2667362 |
aagttacgattccctcatatctagagaggtgaaagggaaatgtattatgtaatctctatttttctagtttctagtttgaaccttgttcttcttgtgataa |
2667461 |
T |
|
| Q |
499 |
ataacactttaattttctgttcctggttttgtttcgttttctatctcaatctcgtttagttctttgatgtaagctttgtttgtttgctcattcattattc |
598 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2667462 |
ataatactttaattttctgttcctggttttgtttcgttttctatctcaatctcgtttagttctttgatgtaagctttgtttgtttgctcattcattattc |
2667561 |
T |
|
| Q |
599 |
tatttcgcacgtcgatat |
616 |
Q |
| |
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|||||||||||||||||| |
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| T |
2667562 |
tatttcgcacgtcgatat |
2667579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 2675986 - 2676444
Alignment:
| Q |
1 |
acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaa |
100 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2675986 |
acagcccaagcagtcaaggataaaacccaacaaacagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaa |
2676085 |
T |
|
| Q |
101 |
tgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2676086 |
tgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgc |
2676185 |
T |
|
| Q |
201 |
aactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2676186 |
aactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgtt |
2676285 |
T |
|
| Q |
301 |
gattgagattattagctactaatactatgtttcaataatcttgtattgtaatttgtttttcttgaatttggtttt-taccaaatgcactttcttttagaa |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||| |
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|
| T |
2676286 |
gattgagattattagc------tactatgtttcgataatgttgtattgtaatttgtttttcttgaatttggttttgaaccaaacgcacttttttatagaa |
2676379 |
T |
|
| Q |
400 |
taagttacgattccctcatatctagaggtgagagggaaatgtattatgtaatctctatttttctagttt |
468 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
2676380 |
taagttgcgattccctcatatctag----gagtgggaaatgtatcatgtaatttctattattctagttt |
2676444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2682014 - 2682281
Alignment:
| Q |
1 |
acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||| || || | || | |
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|
| T |
2682014 |
acagcccaagctgcaaaggagaaaacccagcaagcagctcaagcaacaaaggaaaaagcccaagacacaactggtcaagctagagaaaaaggatcggaga |
2682113 |
T |
|
| Q |
101 |
tgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgc |
200 |
Q |
| |
|
| |||||| | || ||||||||||||||||||||||| ||||||||||| ||||| || || |||||||| || ||||||||||||||||| ||| |||| |
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|
| T |
2682114 |
ttggccagtcaaccaaagaaactgcccaatcaggaaaagacaactcagcagggttcttacagcagacaggagaaaaggttaagggtatggcccaaagtgc |
2682213 |
T |
|
| Q |
201 |
aactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaa |
268 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||||||| ||||||||| ||||||||| |
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|
| T |
2682214 |
tactgaagcagttaagaacacttttggaatggcacatgacgaggaagataaggaccatatcacaacaa |
2682281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2666935 - 2666996
Alignment:
| Q |
1 |
acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaaccca |
62 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||| |
|
|
| T |
2666935 |
acagcccaagctgcaaaggagaaaacccaagaaacagcccaagctgcaaaggacaaaaccca |
2666996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2675953 - 2676015
Alignment:
| Q |
1 |
acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaa |
63 |
Q |
| |
|
||||||||||| || ||||||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
2675953 |
acagcccaagcagctaaggagaaaacccaggaaacagcccaagcagtcaaggataaaacccaa |
2676015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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