View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14882_low_11 (Length: 375)
Name: NF14882_low_11
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 48910633 - 48910379
Alignment:
| Q |
18 |
ttttttgcgcggtcgaagaagtttatctcatcttgacatgaatcaggacctgttataggaggattttccttttctccatgaagtattggttgtgggtaat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48910633 |
ttttttgcgaggtcgaagaagtttatctcatcttgacatgaatcaggacctgttataggaggattttccttttctccatgaagtattggttgtgggtaat |
48910534 |
T |
|
| Q |
118 |
agcaattttctttcatgtattgtaacttgtgaattggaatgacgtttgtagaaactatggaaagttatcaaactgctatttgctcctcccaaaggaaaaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48910533 |
agcaatattctttcatgtattgtaacttgtgaattggaatgatgtttgtagaaactatggaaagttatcaaactgctatttgctcctcccaaaggaaaaa |
48910434 |
T |
|
| Q |
218 |
attattatcattagctgctgtattaaacatttaacatcatcttcattcaaacaag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48910433 |
attattatcattagctgctgtattaaacatttaacatcatcttcattcaaacaag |
48910379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 48910339 - 48910291
Alignment:
| Q |
312 |
gatcatgttatcctactttttataagtataaccagcttctacctctgtg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
48910339 |
gatcatgttatcctactttttataagtataacccgcttctacctttgtg |
48910291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University