View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_low_16 (Length: 307)
Name: NF14882_low_16
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_16 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 48884090 - 48884390
Alignment:
| Q |
7 |
aatatattgtttaattctagattaacatttgtattattttcttcagctcatgaagtaaatgaagattatcataacagaagattgctgatagttgttctgg |
106 |
Q |
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| T |
48884090 |
aatatattgtttaattcttgattaatatttgtatcattttcttcagctcatgaagtaaatgaagattatcataacagaaggttgctgatagttgttctgg |
48884189 |
T |
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| Q |
107 |
ttactgctttgactgctaccgttctcttgggaatggtannnnnnngctactaccacaaaggtaatgaggatataattaactttcaccctagagcgataaa |
206 |
Q |
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| T |
48884190 |
ttactgttttgactgctaccgttctcttgggaatggtatttttttgctactaccacaaaggtaatgaggatataattaactttcaccctagagcgataaa |
48884289 |
T |
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| Q |
207 |
attgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaagaatgatg |
306 |
Q |
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| T |
48884290 |
attgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaagaacagtgataactattacaagaatgatg |
48884389 |
T |
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| Q |
307 |
t |
307 |
Q |
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| T |
48884390 |
t |
48884390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 48478073 - 48477777
Alignment:
| Q |
7 |
aatatattgtttaattctagattaacatttgtattattttcttcagctcatgaagtaaatgaagattatcataacagaagattgctgatagttgttctgg |
106 |
Q |
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| T |
48478073 |
aatatattgtttaattcttgattaatatttgtatcattttcttcagctcatgaagtaaataaagatcatcataacagaaggttgctgatagttgttctgg |
48477974 |
T |
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| Q |
107 |
ttactgctttgactgctaccgttctcttgggaatggtannnnnnngctactaccacaaaggtaatgaggatataattaactttcaccctagagcgataaa |
206 |
Q |
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| T |
48477973 |
ttactgctttgactgctacctttctcttggcaatggtatttttttgctactaccacaaaggtaatgaggatataattaactttcaccctagagcgataaa |
48477874 |
T |
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| Q |
207 |
attgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaagaatg |
303 |
Q |
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| T |
48477873 |
attgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaagaatg |
48477777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 48469755 - 48469449
Alignment:
| Q |
7 |
aatatattgtttaattctagattaacatttgtattattttcttcagctcatgaagtaaatgaagattatcataacagaa------gattgctgatagttg |
100 |
Q |
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| T |
48469755 |
aatatattgtttaactctagattaatattggtatcattttcttcagctcatgaagtaaatgaagatcatcataacagaaacagaaggttgctgatagttg |
48469656 |
T |
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| Q |
101 |
ttctggttactgctttgactgctaccgttctcttgggaatggtannnnnnngctactaccacaaaggtaatgaggatataattaactttcaccctagagc |
200 |
Q |
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| T |
48469655 |
ttctggttactgctttgactgctacctttctcttggcaatggtatttttttgctactaccacaaaggtaatgaggatataattaactttcaccctagagc |
48469556 |
T |
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| Q |
201 |
gataaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaaga |
300 |
Q |
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| T |
48469555 |
gataaaattgaataataaataaagatattgacatgttcacaattttcactttttatttatctcacaccgtttggcaggaacagtgattactattacaaga |
48469456 |
T |
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| Q |
301 |
atgatgt |
307 |
Q |
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| T |
48469455 |
atgatgt |
48469449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 48485811 - 48485698
Alignment:
| Q |
26 |
gattaacatttgtattattttctt-cagctcatgaagtaaatgaagattatcataacagaagattgctgatagttgttctggttactgctttgactgcta |
124 |
Q |
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|||||||||| |||| | |||||| ||||||| |||||| |||||||| ||||||||||||| ||||||||| ||| ||| ||||| || || ||||| |
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| T |
48485811 |
gattaacattagtatcactttctttcagctcaagaagtagatgaagatcatcataacagaaggttgctgataactgtgctgcttactactctggctgctg |
48485712 |
T |
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| Q |
125 |
ccgttctcttggga |
138 |
Q |
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| T |
48485711 |
ccattatcttggga |
48485698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 38817545 - 38817833
Alignment:
| Q |
16 |
tttaattctagattaacatttgtattattttcttcagctcatgaagtaaatgaagattatcataacagaagattgctgatagttgttctggttactgctt |
115 |
Q |
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||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||| | ||||||| ||||||| |||||| ||| |
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| T |
38817545 |
tttaaatctagattaacatttgtatcactttcttcagcttatgaagtaaatgaagatcatcataacagaaagtggctgataattgttctagttactactt |
38817644 |
T |
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| Q |
116 |
tgactgctaccgttctcttgggaatggtannnnnnngctactaccacaaaggtaatgaggatataattaactttcaccctagagcgataaaattgaataa |
215 |
Q |
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| T |
38817645 |
tgacttctaccgttctcttgggaatggtaattt---gctactaccacaaaggtaaggataatataattaactttcactctagagtgataaaattgaataa |
38817741 |
T |
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| Q |
216 |
taaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaagaatgatgt |
307 |
Q |
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| T |
38817742 |
taaataaagatattgacatgtgcacaattttcactttttatttatctcacaccgtttggtaggaacagtgattactattacaagaatgatgt |
38817833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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